RNA id: TU208744


Basic Information

Item Value
RNA id TU208744
length 302
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G183827
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 747994 ~ 748295 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAACTAACCTTTCTTTGGAAAAGATTTGTTTAATTCATTTGGTTATCCAAGGAATATGTTTGCACACTTAGCTAGGAAAATTTGGCATTGAATATTCCCATCCTCTTATTGTAAATCTCTTCCAGTGATTACTAATCTTCAGAAAATAATGCAATGTTATCCTCTTAACTGCCATTTTTACACCCTTTTTGAACATAGACGTGAAAATGTCACGTAATTCATGAATGCTTTGGAATACAGGATCTCTTTTTAAAGACGACACTCAGCAGATTATTGCTGAAGTGAAAGCACTTCAAAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208742 lncRNA upstream 5717 742054 ~ 742277 (+) True G183825
TU208738 lncRNA upstream 14803 729051 ~ 733191 (+) True G183822
TU208690 lncRNA upstream 46389 700312 ~ 701605 (+) True G183775
TU208696 lncRNA upstream 47820 699712 ~ 700174 (+) True G183780
TU208694 lncRNA upstream 50228 697294 ~ 697766 (+) True G183778
TU208745 lncRNA downstream 2480 750775 ~ 751079 (+) True G183828
TU208746 lncRNA downstream 2903 751198 ~ 751473 (+) True G183829
TU208747 lncRNA downstream 3275 751570 ~ 751928 (+) True G183830
TU208748 lncRNA downstream 4390 752685 ~ 753250 (+) True G183831
TU208692 lncRNA downstream 5724 754019 ~ 758059 (+) True G183776
CI01000040_00643738_00689792.mRNA mRNA upstream 58076 643738 ~ 689918 (+) True CI01000040_00643738_00689792
CI01000040_00554753_00561571.mRNA mRNA upstream 185001 554753 ~ 562993 (+) True CI01000040_00554753_00561571
CI01000040_00512880_00513451.mRNA mRNA upstream 234397 512880 ~ 513597 (+) True CI01000040_00512880_00513451
CI01000040_00366809_00384965.mRNA mRNA upstream 362735 366709 ~ 385259 (+) True CI01000040_00366809_00384965
CI01000040_00347516_00350540.mRNA mRNA upstream 397393 347516 ~ 350601 (+) True CI01000040_00347516_00350540
CI01000040_00839831_00841736.mRNA mRNA downstream 91536 839831 ~ 841736 (+) True CI01000040_00839831_00841736
CI01000040_00849226_00851895.mRNA mRNA downstream 100931 849226 ~ 851915 (+) True CI01000040_00849226_00851895
CI01000040_00863147_00874526.mRNA mRNA downstream 114852 863147 ~ 874546 (+) True CI01000040_00863147_00874526
CI01000040_00879146_00889251.mRNA mRNA downstream 130851 879146 ~ 889483 (+) True CI01000040_00879146_00889251
CI01000040_00895179_00895620.mRNA mRNA downstream 146884 895179 ~ 895649 (+) False CI01000040_00895179_00895620
TU208290 other upstream 471139 197712 ~ 276855 (+) True G183418
TU208294 other upstream 583072 157543 ~ 164922 (+) True G183420
TU208230 other upstream 687597 53691 ~ 60397 (+) True G183366
TU208979 other downstream 225818 974113 ~ 974246 (+) True G184034
TU208940 other downstream 481997 1230292 ~ 1236489 (+) True G184003
TU210451 other downstream 2585283 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 2990692 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 3225470 3973765 ~ 3974123 (+) True G185947

Expression Profile