RNA id: TU208759


Basic Information

Item Value
RNA id TU208759
length 202
lncRNA type antisense_over
GC content 0.26
exon number 1
gene id G183842
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 794759 ~ 794960 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACCCAACTTGGGTTGTTTTTAATCAAGCATTTTTTAGAGTGTTTATAGTATAAAAATCATTTTGAACAAGTAATTTTTGTTCATTAACAAAATAAATGATAAATTCTTGTAAAAACCTTGATGTCCTTGTTTTCATTGTCTTCATGTCTATCTTGTAATGTTATAATCCACCACATATTTAATTTGAAGCAGATACATGTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208692 lncRNA upstream 36700 754019 ~ 758059 (+) True G183776
TU208748 lncRNA upstream 41509 752685 ~ 753250 (+) True G183831
TU208747 lncRNA upstream 42831 751570 ~ 751928 (+) True G183830
TU208746 lncRNA upstream 43286 751198 ~ 751473 (+) True G183829
TU208745 lncRNA upstream 43680 750775 ~ 751079 (+) True G183828
TU208761 lncRNA downstream 5454 800414 ~ 800712 (+) False G183844
TU208762 lncRNA downstream 5454 800414 ~ 800757 (+) True G183844
TU208766 lncRNA downstream 12005 806965 ~ 807205 (+) True G183846
TU208767 lncRNA downstream 14805 809765 ~ 810023 (+) True G183847
TU208771 lncRNA downstream 26146 821106 ~ 823335 (+) False G183849
CI01000040_00643738_00689792.mRNA mRNA upstream 104841 643738 ~ 689918 (+) True CI01000040_00643738_00689792
CI01000040_00554753_00561571.mRNA mRNA upstream 231766 554753 ~ 562993 (+) True CI01000040_00554753_00561571
CI01000040_00512880_00513451.mRNA mRNA upstream 281162 512880 ~ 513597 (+) True CI01000040_00512880_00513451
CI01000040_00366809_00384965.mRNA mRNA upstream 409500 366709 ~ 385259 (+) True CI01000040_00366809_00384965
CI01000040_00347516_00350540.mRNA mRNA upstream 444158 347516 ~ 350601 (+) True CI01000040_00347516_00350540
CI01000040_00839831_00841736.mRNA mRNA downstream 44871 839831 ~ 841736 (+) True CI01000040_00839831_00841736
CI01000040_00849226_00851895.mRNA mRNA downstream 54266 849226 ~ 851915 (+) True CI01000040_00849226_00851895
CI01000040_00863147_00874526.mRNA mRNA downstream 68187 863147 ~ 874546 (+) True CI01000040_00863147_00874526
CI01000040_00879146_00889251.mRNA mRNA downstream 84186 879146 ~ 889483 (+) True CI01000040_00879146_00889251
CI01000040_00895179_00895620.mRNA mRNA downstream 100219 895179 ~ 895649 (+) False CI01000040_00895179_00895620
TU208290 other upstream 517904 197712 ~ 276855 (+) True G183418
TU208294 other upstream 629837 157543 ~ 164922 (+) True G183420
TU208230 other upstream 734362 53691 ~ 60397 (+) True G183366
TU208979 other downstream 179153 974113 ~ 974246 (+) True G184034
TU208940 other downstream 435332 1230292 ~ 1236489 (+) True G184003
TU210451 other downstream 2538618 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 2944027 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 3178805 3973765 ~ 3974123 (+) True G185947

Expression Profile