RNA id: TU208884



Basic Information


Item Value
RNA id TU208884
length 230
lncRNA type intronic
GC content 0.45
exon number 1
gene id G183957
representative True

Chromosome Information


Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 796102 ~ 796331 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTCTGCCATGGCTGTCCCAGTCCCCTGACCTGAACCCTAAAGAAAATGAGTGGAGTGAACTGAAGAGGAGAAGCACCAACATGGAGCTGGGAATCTGAAGGATCTGGAGAGATTCTGTATGAAGGAATGATCTCTGATCTCTTGTCAGGTGTTCTCCAAACTCATCAGGCATTATAGAAGAAGACTCAGAGCAAAAGGAGGTTGCAAAAAGTATTGAATAAAAGGGTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208883 lncRNA downstream 1381 794458 ~ 794721 (-) True G183956
TU208871 lncRNA downstream 55890 739982 ~ 740212 (-) True G183944
TU208864 lncRNA downstream 69248 713116 ~ 726854 (-) True G183937
TU208830 lncRNA downstream 96745 698379 ~ 699357 (-) True G183905
TU208829 lncRNA downstream 98401 696502 ~ 697701 (-) True G183904
TU208885 lncRNA upstream 608 796939 ~ 797169 (-) True G183958
TU208886 lncRNA upstream 996 797327 ~ 797539 (-) True G183959
TU208887 lncRNA upstream 2021 798352 ~ 798564 (-) True G183960
TU208889 lncRNA upstream 4096 800427 ~ 800668 (-) True G183962
TU209433 lncRNA upstream 85182 881513 ~ 881773 (-) True G184428
CI01000040_00760116_00779888.mRNA mRNA downstream 15220 760116 ~ 780882 (-) True CI01000040_00760116_00779888
CI01000040_00701332_00746419.mRNA mRNA downstream 49138 700833 ~ 746964 (-) True CI01000040_00701332_00746419
CI01000040_00626750_00628543.mRNA mRNA downstream 167543 626481 ~ 628559 (-) False CI01000040_00626750_00628543
CI01000040_00623449_00625433.mRNA mRNA downstream 170066 623423 ~ 626036 (-) True CI01000040_00623449_00625433
CI01000040_00569008_00598590.mRNA mRNA downstream 197512 568760 ~ 598590 (-) True CI01000040_00569008_00598590
CI01000040_00810717_00829640.mRNA mRNA upstream 14078 810409 ~ 829640 (-) True CI01000040_00810717_00829640
CI01000040_00837863_00839807.mRNA mRNA upstream 41132 837463 ~ 839807 (-) True CI01000040_00837863_00839807
CI01000040_00961941_00973627.mRNA mRNA upstream 165610 961941 ~ 973627 (-) True CI01000040_00961941_00973627
CI01000040_01002406_01015284.mRNA mRNA upstream 204391 1000722 ~ 1015284 (-) True CI01000040_01002406_01015284
CI01000040_01134768_01140438.mRNA mRNA upstream 338088 1134419 ~ 1141116 (-) True CI01000040_01134768_01140438
TU208782 other downstream 167408 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208367 other downstream 745376 46627 ~ 50726 (-) True G183474
TU208899 other upstream 36809 833140 ~ 833541 (-) True G183972
TU210608 other upstream 1798915 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 1799048 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 2195857 2992188 ~ 2992683 (-) True G185593
TU210881 other upstream 2548144 3344475 ~ 3344880 (-) True G185681

Expression Profile