RNA id: TU208771


Basic Information

Item Value
RNA id TU208771
length 336
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G183849
representative False

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 821106 ~ 823335 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCAAGCGTCGGGTGAGTTCGATGGCTCGTGGCAGATCACCCATCTGATAGACAGAGTAACTAAGATAATCTAAAATATCAGCCTTGGGCGTCTTGGCTTCTTCCCCAGAGTCCATCTGTCTCAGCGCCTGCTGCATCCACAGCACTGCATGATAGTAGTCGTTCTCATTGTAGTCCAGTTTATACGTGTCCTGCAGACGCATGAGCGCTTTGGCTGCTCCCTTTTCATCCTCCTCATCAGGGAAATACTGTCTGTGCACAGACATGTTTGATATGAAGCCTTCAGGAGGAAAAGAGAAAAAAAGAGCTTTGTGGAAGGTTTTTTTATTAGACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208767 lncRNA upstream 11083 809765 ~ 810023 (+) True G183847
TU208766 lncRNA upstream 13901 806965 ~ 807205 (+) True G183846
TU208762 lncRNA upstream 20349 800414 ~ 800757 (+) True G183844
TU208761 lncRNA upstream 20394 800414 ~ 800712 (+) False G183844
TU208759 lncRNA upstream 26146 794759 ~ 794960 (+) True G183842
TU208897 lncRNA downstream 8970 832305 ~ 832856 (+) True G183970
TU208898 lncRNA downstream 9810 833145 ~ 833531 (+) True G183971
TU208909 lncRNA downstream 18407 841742 ~ 842086 (+) True G183981
TU208993 lncRNA downstream 64744 888079 ~ 931141 (+) True G184048
TU208982 lncRNA downstream 68177 891512 ~ 897044 (+) True G184037
CI01000040_00643738_00689792.mRNA mRNA upstream 131188 643738 ~ 689918 (+) True CI01000040_00643738_00689792
CI01000040_00554753_00561571.mRNA mRNA upstream 258113 554753 ~ 562993 (+) True CI01000040_00554753_00561571
CI01000040_00512880_00513451.mRNA mRNA upstream 307509 512880 ~ 513597 (+) True CI01000040_00512880_00513451
CI01000040_00366809_00384965.mRNA mRNA upstream 435847 366709 ~ 385259 (+) True CI01000040_00366809_00384965
CI01000040_00347516_00350540.mRNA mRNA upstream 470505 347516 ~ 350601 (+) True CI01000040_00347516_00350540
CI01000040_00839831_00841736.mRNA mRNA downstream 16496 839831 ~ 841736 (+) True CI01000040_00839831_00841736
CI01000040_00849226_00851895.mRNA mRNA downstream 25891 849226 ~ 851915 (+) True CI01000040_00849226_00851895
CI01000040_00863147_00874526.mRNA mRNA downstream 39812 863147 ~ 874546 (+) True CI01000040_00863147_00874526
CI01000040_00879146_00889251.mRNA mRNA downstream 55811 879146 ~ 889483 (+) True CI01000040_00879146_00889251
CI01000040_00895179_00895620.mRNA mRNA downstream 71844 895179 ~ 895649 (+) False CI01000040_00895179_00895620
TU208290 other upstream 544251 197712 ~ 276855 (+) True G183418
TU208294 other upstream 656184 157543 ~ 164922 (+) True G183420
TU208230 other upstream 760709 53691 ~ 60397 (+) True G183366
TU208979 other downstream 150778 974113 ~ 974246 (+) True G184034
TU208940 other downstream 406957 1230292 ~ 1236489 (+) True G184003
TU210451 other downstream 2510243 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 2915652 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 3150430 3973765 ~ 3974123 (+) True G185947

Expression Profile