RNA id: TU209451


Basic Information

Item Value
RNA id TU209451
length 711
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G184436
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 908093 ~ 911011 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGATAACCCTCCAAATATAATGGCACCTGTCAGTACTCCTCCCATGTAAATGGTCTGGCTCATCTGTTTGAGTGGACGTAGGGTACAAACTAAATCTTCTGATACTATAGATGAGATGAATTCAGTCTTGTCATATGTCCAGCCATCTGCACAACCCTCTGTCTGCAGTTCAGTTGCATTTCTGTAACTCAGTTGTTCTGTGATTAAATGCCACTGAGTATCAGTGTACCGAGAGCATTTGGACAGTGTCAGTGATGAATCCAGTGGGATAAACGCACGCAGGAGTGCCGCTGTGCTCTCATTCAGTGCAGCCGTTATATTTGGTATGCGACAGTGATGTTCCGGTACACCAGCAGTAAAGTTATTTAGTAAATTCTGGCTAGCCATCAGAAGGCCCGGGATGGACAGAAGAGCGACATGAATCAGCTGAAAGCGTCCAAACCCGCCAACTTCATTCAGAAGATCCGCAAAGCCCATACTGATCCGAGACTCCCGTAATATTTCTAGATCTGAGGAGTTTTCCTCAGCAGATTGACACAACTCACCACGACTAAACTCTTAATCTTAGATGAAAAACAAGCAAAAAAGCTATTTAAAACTTTGAATGATTAATTTTGGGGTTAATGGTTGCCAAAGGACTTTCTGATTCTGAAAACTAAGCATTCTTCTAAACACAATCACACAAACACAGAGCTGAACTGAATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209438 lncRNA downstream 10954 888626 ~ 897139 (-) False G184430
TU209442 lncRNA downstream 11025 895963 ~ 897068 (-) True G184430
TU209433 lncRNA downstream 26320 881513 ~ 881773 (-) True G184428
TU208889 lncRNA downstream 107425 800427 ~ 800668 (-) True G183962
TU208887 lncRNA downstream 109529 798352 ~ 798564 (-) True G183960
TU209471 lncRNA upstream 22417 933428 ~ 954673 (-) False G184445
TU209465 lncRNA upstream 30455 941466 ~ 954673 (-) False G184445
TU209467 lncRNA upstream 35040 946051 ~ 954673 (-) True G184445
TU209490 lncRNA upstream 74851 985862 ~ 986222 (-) True G184460
TU209543 lncRNA upstream 217526 1128537 ~ 1148282 (-) True G184497
CI01000040_00837863_00839807.mRNA mRNA downstream 68286 837463 ~ 839807 (-) True CI01000040_00837863_00839807
CI01000040_00810717_00829640.mRNA mRNA downstream 78453 810409 ~ 829640 (-) True CI01000040_00810717_00829640
CI01000040_00795062_00809762.mRNA mRNA downstream 98331 794937 ~ 809762 (-) True CI01000040_00795062_00809762
CI01000040_00760116_00779888.mRNA mRNA downstream 127211 760116 ~ 780882 (-) True CI01000040_00760116_00779888
CI01000040_00701332_00746419.mRNA mRNA downstream 161129 700833 ~ 746964 (-) True CI01000040_00701332_00746419
CI01000040_00961941_00973627.mRNA mRNA upstream 50930 961941 ~ 973627 (-) True CI01000040_00961941_00973627
CI01000040_01002406_01015284.mRNA mRNA upstream 89711 1000722 ~ 1015284 (-) True CI01000040_01002406_01015284
CI01000040_01134768_01140438.mRNA mRNA upstream 223408 1134419 ~ 1141116 (-) True CI01000040_01134768_01140438
CI01000040_01150384_01152552.mRNA mRNA upstream 239024 1150035 ~ 1152552 (-) True CI01000040_01150384_01152552
CI01000040_01160713_01185710.mRNA mRNA upstream 249064 1160075 ~ 1186329 (-) True CI01000040_01160713_01185710
TU208899 other downstream 74552 833140 ~ 833541 (-) True G183972
TU208782 other downstream 279399 625832 ~ 628694 (-) True CI01000040_00626750_00628543
TU208367 other downstream 857367 46627 ~ 50726 (-) True G183474
TU210608 other upstream 1684235 2595246 ~ 2596376 (-) False CI01000040_02595281_02596387
TU210615 other upstream 1684368 2595379 ~ 2596424 (-) True CI01000040_02595281_02596387
TU210786 other upstream 2081177 2992188 ~ 2992683 (-) True G185593
TU210881 other upstream 2433464 3344475 ~ 3344880 (-) True G185681
TU212605 other upstream 4353182 5264193 ~ 5286918 (-) True G187207

Expression Profile