RNA id: TU209026


Basic Information

Item Value
RNA id TU209026
length 517
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G184077
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1075643 ~ 1121547 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCCAATGATCTGTGCATAAATGTTTCTATATCTTAAAATGACTGACTTGCCACAGTGGGTCGCCTTACAGCGAGGTCCGCCAGGTGTCCTCCAGGTGGGTGTGAGTGAGTGTTATTCCTGTGATGGAAAAGCAACAGTTTCACAAATCTTTTAGAAAATACTATTTCAAAAACATTTCGGTTTCATCATCATCAATGTGACAGACAGCAAGATTTGTAGTAGTAGCCCAGTGAACTAAACCAAACACTTAATCTGCACTGAATACTTCCCCGTCTTTGTATAGTCAGAGTAACCAGCTGTTCACATTACACACAGTTAGTTGTGGAACTTAGAGCTGGGGTGCCCAAGAGTGTGAAAGAGTCACTTTTTTACTTGCTCACATGATCTTATCCTCTTAGGTTCAGGCATATCCCAGCATCTCAGGCCACAGGCGGGGAATACCCCAGACAGATGGCCAGTCCGTCACAGCACTCACACACACACACACACACACACACACACACACACACACACACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209010 lncRNA upstream 104069 970765 ~ 971574 (+) True G184062
TU209009 lncRNA upstream 110697 961089 ~ 964946 (+) True G184061
TU208993 lncRNA upstream 144502 888079 ~ 931141 (+) True G184048
TU208982 lncRNA upstream 178599 891512 ~ 897044 (+) True G184037
TU208909 lncRNA upstream 233557 841742 ~ 842086 (+) True G183981
TU209035 lncRNA downstream 12496 1134043 ~ 1150549 (+) False G184086
TU209036 lncRNA downstream 12496 1134043 ~ 1150549 (+) True G184086
TU208948 lncRNA downstream 22635 1144182 ~ 1160977 (+) True G184008
TU208942 lncRNA downstream 41295 1162842 ~ 1180537 (+) True G184005
TU208966 lncRNA downstream 208412 1329959 ~ 1351377 (+) True G184022
CI01000040_01036304_01041594.mRNA mRNA upstream 33874 1035474 ~ 1041769 (+) True CI01000040_01036304_01041594
CI01000040_00981074_00988746.mRNA mRNA upstream 86836 981074 ~ 988807 (+) True CI01000040_00981074_00988746
CI01000040_00977184_00977458.mRNA mRNA upstream 98132 977184 ~ 977511 (+) False CI01000040_00977184_00977458
CI01000040_00941839_00959939.mRNA mRNA upstream 115589 941839 ~ 960054 (+) True CI01000040_00941839_00959939
CI01000040_00908325_00928762.mRNA mRNA upstream 146817 907887 ~ 928826 (+) True CI01000040_00908325_00928762
CI01000040_01206296_01212731.mRNA mRNA downstream 84581 1206128 ~ 1212731 (+) True CI01000040_01206296_01212731
CI01000040_01267267_01282224.mRNA mRNA downstream 145720 1267267 ~ 1282435 (+) True CI01000040_01267267_01282224
CI01000040_01296612_01311591.mRNA mRNA downstream 175065 1296612 ~ 1311621 (+) True CI01000040_01296612_01311591
CI01000040_01332036_01345122.mRNA mRNA downstream 210489 1332036 ~ 1345156 (+) True CI01000040_01332036_01345122
CI01000040_01399805_01411103.mRNA mRNA downstream 278258 1399805 ~ 1411675 (+) True CI01000040_01399805_01411103
TU208979 other upstream 97480 974113 ~ 974246 (+) True G184034
TU208290 other upstream 798788 197712 ~ 276855 (+) True G183418
TU208294 other upstream 910721 157543 ~ 164922 (+) True G183420
TU208230 other upstream 1015246 53691 ~ 60397 (+) True G183366
TU208940 other downstream 108745 1230292 ~ 1236489 (+) True G184003
TU210451 other downstream 2212031 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 2617440 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 2852218 3973765 ~ 3974123 (+) True G185947
TU212953 other downstream 4847498 5969045 ~ 5971732 (+) False G187510

Expression Profile