RNA id: TU209036



Basic Information


Item Value
RNA id TU209036
length 896
lncRNA type read_through
GC content 0.34
exon number 2
gene id G184086
representative True

Chromosome Information


Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1134043 ~ 1150549 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTATTTATTTATTTATTTTAATGTATAATGCCAAGAGATACATTTTCAGTGTCTTAAGTGATATTGAACATGTACAACAACTGGAATGCAACTAAGATAGGCTTTTACATCTGATGTTTTGAACTATGCATAATGTTATAACGGTTACAACAGGCAGTTTGCCAACAGTTTGATGCTAGGTTTCAACATCTATTTTATTGCACATCTTAACTGTACTAATCAAATCTGTGGACAGCTACTGATCTGTTTACCTATTACAGTATGTACAAATCAGTTTACCTATATACAGTACAGTATACAATACAGTTTACAGTATATATTTATATTTGTACAAATTTCAATACCATCTCAGTTGAGCCTGTGAAACTGTGGGCTTTATTCGGGCTGGAATAGTTGCCAATCAGCCTTTTTTTAAAAGCAGATTTTTATATATAGTAGTAAAATACTTTTCATTTACCTACATTTTCAATTTTTCTCAAAATACAAAGCAAATTTATGATGAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAGAACTGTTCCCCAGCACCACCCTACAAAAATAGAAGTAATATTAGATGAACTAGATACTAATGGGCAGTTTTTTTTAAAGATGGATAATACAAAACTTTACATAAGTTAAGACAAATCACTTCGGCAACTTGTCCAATGAATTCATGAGTTTTCAGAGAAGTACTGGATATCATACAGTCCTCAAGACCCTGGATCAGTGCAGTTGTTGATCTGTTCTGGGTTCAGGCTCCGAGCTTCAGCGATGAGACGCTTGACTCCCACCATCCACTGACTGACTTCAGAAACATGGTCGACCATGAGGCCTCTGTGGATCTCATCAGCTGCATCCCAGTTTCTTCTTTTCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU209026 lncRNA upstream 12496 1075643 ~ 1121547 (+) True G184077
TU209010 lncRNA upstream 162469 970765 ~ 971574 (+) True G184062
TU209009 lncRNA upstream 169097 961089 ~ 964946 (+) True G184061
TU208993 lncRNA upstream 202902 888079 ~ 931141 (+) True G184048
TU208942 lncRNA downstream 12293 1162842 ~ 1180537 (+) True G184005
TU208966 lncRNA downstream 179410 1329959 ~ 1351377 (+) True G184022
TU208951 lncRNA downstream 198317 1348866 ~ 1388236 (+) True G184009
TU209067 lncRNA downstream 221623 1372172 ~ 1393542 (+) True G184112
TU209072 lncRNA downstream 274549 1425098 ~ 1425502 (+) True G184117
CI01000040_01065647_01124429.mRNA mRNA upstream 9614 1065647 ~ 1124429 (+) True CI01000040_01065647_01124429
CI01000040_01036304_01041594.mRNA mRNA upstream 92274 1035474 ~ 1041769 (+) True CI01000040_01036304_01041594
CI01000040_00981074_00988746.mRNA mRNA upstream 145236 981074 ~ 988807 (+) True CI01000040_00981074_00988746
CI01000040_00977184_00977458.mRNA mRNA upstream 156532 977184 ~ 977511 (+) False CI01000040_00977184_00977458
CI01000040_00941839_00959939.mRNA mRNA upstream 173989 941839 ~ 960054 (+) True CI01000040_00941839_00959939
CI01000040_01206296_01212731.mRNA mRNA downstream 55579 1206128 ~ 1212731 (+) True CI01000040_01206296_01212731
CI01000040_01267267_01282224.mRNA mRNA downstream 116718 1267267 ~ 1282435 (+) True CI01000040_01267267_01282224
CI01000040_01296612_01311591.mRNA mRNA downstream 146063 1296612 ~ 1311621 (+) True CI01000040_01296612_01311591
CI01000040_01332036_01345122.mRNA mRNA downstream 181487 1332036 ~ 1345156 (+) True CI01000040_01332036_01345122
CI01000040_01399805_01411103.mRNA mRNA downstream 249256 1399805 ~ 1411675 (+) True CI01000040_01399805_01411103
TU208979 other upstream 155880 974113 ~ 974246 (+) True G184034
TU208290 other upstream 857188 197712 ~ 276855 (+) True G183418
TU208294 other upstream 969121 157543 ~ 164922 (+) True G183420
TU208230 other upstream 1073646 53691 ~ 60397 (+) True G183366
TU208940 other downstream 79743 1230292 ~ 1236489 (+) True G184003
TU210451 other downstream 2183029 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 2588438 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 2823216 3973765 ~ 3974123 (+) True G185947
TU212953 other downstream 4818496 5969045 ~ 5971732 (+) False G187510

Expression Profile