RNA id: TU209079


Basic Information

Item Value
RNA id TU209079
length 354
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G184124
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1436940 ~ 1437293 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCAGCACAAATCCTCAGCTAAAGAAGTCACACAGTGAAATTGACACTAAAATCCATTGTAGCCTATATTATGAATCCAGAAGATTGCATGTTCGATTATATGCCTATGGATTAGTAATTACTCTAATAATCAGATATGGCGCGTTCATAATTGATATTAAGAATAATCTTATGTAACATTAAGACTGTACCACCAAAACCTGTCAGAACCAAACAAACGGGACCAGTGCACCAAATGTTAGGATAAAACAGATGTGCAGCATTGCAGTAAAGGTATGAAAACAACTCAGAAAGAGAGTGCGTTTCTCATGCACAACTGAGATTTGAAGTTTGTTCCACCCATTTTCAGGAACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209072 lncRNA upstream 11438 1425098 ~ 1425502 (+) True G184117
TU209067 lncRNA upstream 43398 1372172 ~ 1393542 (+) True G184112
TU208951 lncRNA upstream 48704 1348866 ~ 1388236 (+) True G184009
TU208966 lncRNA upstream 85563 1329959 ~ 1351377 (+) True G184022
TU208942 lncRNA upstream 256403 1162842 ~ 1180537 (+) True G184005
TU209082 lncRNA downstream 3266 1440559 ~ 1440781 (+) True G184127
TU209128 lncRNA downstream 86940 1524233 ~ 1530255 (+) True G184161
TU209182 lncRNA downstream 157016 1594309 ~ 1594820 (+) True G184194
TU209187 lncRNA downstream 163703 1600996 ~ 1601249 (+) True G184198
TU209188 lncRNA downstream 164421 1601714 ~ 1601944 (+) True G184199
CI01000040_01399805_01411103.mRNA mRNA upstream 25265 1399805 ~ 1411675 (+) True CI01000040_01399805_01411103
CI01000040_01332036_01345122.mRNA mRNA upstream 91784 1332036 ~ 1345156 (+) True CI01000040_01332036_01345122
CI01000040_01296612_01311591.mRNA mRNA upstream 125319 1296612 ~ 1311621 (+) True CI01000040_01296612_01311591
CI01000040_01267267_01282224.mRNA mRNA upstream 154505 1267267 ~ 1282435 (+) True CI01000040_01267267_01282224
CI01000040_01206296_01212731.mRNA mRNA upstream 224209 1206128 ~ 1212731 (+) True CI01000040_01206296_01212731
CI01000040_01454703_01458555.mRNA mRNA downstream 17410 1454703 ~ 1459283 (+) True CI01000040_01454703_01458555
CI01000040_01490929_01498480.mRNA mRNA downstream 53601 1490894 ~ 1498497 (+) True CI01000040_01490929_01498480
CI01000040_01535182_01539109.mRNA mRNA downstream 97807 1535100 ~ 1539460 (+) True CI01000040_01535182_01539109
CI01000040_01539717_01540595.mRNA mRNA downstream 102297 1539590 ~ 1540649 (+) True CI01000040_01539717_01540595
CI01000040_01540821_01545220.mRNA mRNA downstream 103461 1540754 ~ 1545260 (+) True CI01000040_01540821_01545220
TU208940 other upstream 200451 1230292 ~ 1236489 (+) True G184003
TU208979 other upstream 458777 974113 ~ 974246 (+) True G184034
TU208290 other upstream 1160085 197712 ~ 276855 (+) True G183418
TU208294 other upstream 1272018 157543 ~ 164922 (+) True G183420
TU208230 other upstream 1376543 53691 ~ 60397 (+) True G183366
TU210451 other downstream 1896285 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 2301694 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 2536472 3973765 ~ 3974123 (+) True G185947
TU212953 other downstream 4531752 5969045 ~ 5971732 (+) False G187510
TU212954 other downstream 4531752 5969045 ~ 5971732 (+) False G187510

Expression Profile