RNA id: TU209188


Basic Information

Item Value
RNA id TU209188
length 231
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G184199
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1601714 ~ 1601944 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTACACACAGACTGATATATTTCAAATGTTTATTTCTTTTAATTTTGATGATTATAACTGACAACTAAGGAAAATACCAAATTCAGTATCTCAGAAAATTAGAATATTGTGAAAAGGTTCAATATTGAAGACACCTGGTGCCACACTCTAATCAGCTAATTAACTCAAAACACCTGCAAAGGCCTTTAAATGGTCTCTCAGTCTAGTTCTGTAGGCTACACAATCATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209187 lncRNA upstream 465 1600996 ~ 1601249 (+) True G184198
TU209182 lncRNA upstream 6894 1594309 ~ 1594820 (+) True G184194
TU209128 lncRNA upstream 71459 1524233 ~ 1530255 (+) True G184161
TU209082 lncRNA upstream 160933 1440559 ~ 1440781 (+) True G184127
TU209079 lncRNA upstream 164421 1436940 ~ 1437293 (+) True G184124
TU209175 lncRNA downstream 20605 1622549 ~ 1634932 (+) True G184187
TU209218 lncRNA downstream 87512 1689456 ~ 1689667 (+) True G184229
TU209220 lncRNA downstream 89478 1691422 ~ 1691759 (+) True G184231
TU209223 lncRNA downstream 91858 1693802 ~ 1694200 (+) True G184234
TU209224 lncRNA downstream 93649 1695593 ~ 1695954 (+) True G184235
CI01000040_01579092_01597460.mRNA mRNA upstream 3234 1579012 ~ 1598480 (+) True CI01000040_01579092_01597460
CI01000040_01553258_01557964.mRNA mRNA upstream 41547 1553258 ~ 1560167 (+) True CI01000040_01553258_01557964
CI01000040_01540821_01545220.mRNA mRNA upstream 56454 1540754 ~ 1545260 (+) True CI01000040_01540821_01545220
CI01000040_01539717_01540595.mRNA mRNA upstream 61065 1539590 ~ 1540649 (+) True CI01000040_01539717_01540595
CI01000040_01535182_01539109.mRNA mRNA upstream 62254 1535100 ~ 1539460 (+) True CI01000040_01535182_01539109
CI01000040_01604128_01609619.mRNA mRNA downstream 2184 1604128 ~ 1609714 (+) True CI01000040_01604128_01609619
CI01000040_01706518_01706939.mRNA mRNA downstream 104574 1706518 ~ 1707234 (+) True CI01000040_01706518_01706939
CI01000040_01707444_01725985.mRNA mRNA downstream 105337 1707281 ~ 1725985 (+) True CI01000040_01707444_01725985
CI01000040_01728828_01731709.mRNA mRNA downstream 125828 1727772 ~ 1732232 (+) True CI01000040_01728828_01731709
CI01000040_01760148_01802721.mRNA mRNA downstream 158204 1760148 ~ 1803002 (+) True CI01000040_01760148_01802721
TU208940 other upstream 365225 1230292 ~ 1236489 (+) True G184003
TU208979 other upstream 623551 974113 ~ 974246 (+) True G184034
TU208290 other upstream 1324859 197712 ~ 276855 (+) True G183418
TU208294 other upstream 1436792 157543 ~ 164922 (+) True G183420
TU208230 other upstream 1541317 53691 ~ 60397 (+) True G183366
TU210451 other downstream 1731634 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 2137043 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 2371821 3973765 ~ 3974123 (+) True G185947
TU212953 other downstream 4367101 5969045 ~ 5971732 (+) False G187510
TU212954 other downstream 4367101 5969045 ~ 5971732 (+) False G187510

Expression Profile