RNA id: TU211111


Basic Information

Item Value
RNA id TU211111
length 295
RNA type TUCP
GC content 0.56
exon number 1
gene id G185884
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 3738987 ~ 3739281 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCTCTTCATAAATCCCATTGTCTGGTCCGAAGAAACCATGCCCTCCTCCAATGCCTCCACCAACACTCCGCCAGGTTGCCCGCCAGGTTTGCTCTACATCACCCAGACACGGCGCACTCCTCTTATCCACACATCCCACACGTCACTGGGCACTGGCCACCCTGGGGTCAATGAAACCCTCTCGCTGCTAAAAGAGCGCTTCTGGTGGCCGAACATGGCAGCTGACATCAGAAGGTACGTGCAAGGATGTAAGGAATGCGCCATCTGTAAGAGTCCTTGGCATCTTCCCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211104 lncRNA upstream 12752 3725985 ~ 3726235 (+) True G185877
TU211098 lncRNA upstream 27436 3711244 ~ 3711551 (+) True G185871
TU211043 lncRNA upstream 98230 3561538 ~ 3640757 (+) False G185818
TU211044 lncRNA upstream 98230 3602094 ~ 3640757 (+) True G185818
TU211036 lncRNA upstream 182626 3556072 ~ 3556361 (+) True G185814
TU211007 lncRNA downstream 62938 3802219 ~ 3803713 (+) True G185790
TU211145 lncRNA downstream 127340 3866621 ~ 3866854 (+) True G185912
TU210996 lncRNA downstream 150143 3889424 ~ 3891659 (+) True G185779
TU211147 lncRNA downstream 153998 3893279 ~ 3893481 (+) True G185914
TU211148 lncRNA downstream 154204 3893485 ~ 3893687 (+) True G185915
CI01000040_03297317_03298657.mRNA mRNA upstream 440091 3296455 ~ 3298896 (+) True CI01000040_03297317_03298657
CI01000040_03271519_03276006.mRNA mRNA upstream 462947 3271063 ~ 3276040 (+) True CI01000040_03271519_03276006
CI01000040_03212701_03215022.mRNA mRNA upstream 523819 3212701 ~ 3215168 (+) True CI01000040_03212701_03215022
CI01000040_03168337_03198400.mRNA mRNA upstream 540587 3168337 ~ 3198400 (+) True CI01000040_03168337_03198400
CI01000040_02975088_02975548.mRNA mRNA upstream 763041 2975088 ~ 2975946 (+) True CI01000040_02975088_02975548
CI01000040_03761247_03762668.mRNA mRNA downstream 21880 3761161 ~ 3762674 (+) True CI01000040_03761247_03762668
CI01000040_03789687_03800746.mRNA mRNA downstream 49800 3789081 ~ 3800746 (+) True CI01000040_03789687_03800746
CI01000040_03939728_03943493.mRNA mRNA downstream 199027 3938308 ~ 3943624 (+) True CI01000040_03939728_03943493
CI01000040_04047210_04060876.mRNA mRNA downstream 307929 4047210 ~ 4061675 (+) True CI01000040_04047210_04060876
CI01000040_04063098_04068134.mRNA mRNA downstream 323666 4062947 ~ 4068198 (+) True CI01000040_04063098_04068134
TU210451 other upstream 405004 3333578 ~ 3333983 (+) True G185296
TU208940 other upstream 2502498 1230292 ~ 1236489 (+) True G184003
TU208979 other upstream 2760824 974113 ~ 974246 (+) True G184034
TU208290 other upstream 3462132 197712 ~ 276855 (+) True G183418
TU208294 other upstream 3574065 157543 ~ 164922 (+) True G183420
TU211185 other downstream 234484 3973765 ~ 3974123 (+) True G185947
TU212953 other downstream 2229764 5969045 ~ 5971732 (+) False G187510
TU212954 other downstream 2229764 5969045 ~ 5971732 (+) False G187510
TU212956 other downstream 2229764 5969045 ~ 5971732 (+) True G187510
TU213649 other downstream 3069410 6808691 ~ 6809130 (+) True G188149

Expression Profile