Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU211007 |
| length | 1495 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 1 |
| gene id | G185790 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 3802219 ~ 3803713 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU211104 | lncRNA | upstream | 75984 | 3725985 ~ 3726235 (+) | True | G185877 |
| TU211098 | lncRNA | upstream | 90668 | 3711244 ~ 3711551 (+) | True | G185871 |
| TU211043 | lncRNA | upstream | 161462 | 3561538 ~ 3640757 (+) | False | G185818 |
| TU211044 | lncRNA | upstream | 161462 | 3602094 ~ 3640757 (+) | True | G185818 |
| TU211036 | lncRNA | upstream | 245858 | 3556072 ~ 3556361 (+) | True | G185814 |
| TU211145 | lncRNA | downstream | 62908 | 3866621 ~ 3866854 (+) | True | G185912 |
| TU210996 | lncRNA | downstream | 85711 | 3889424 ~ 3891659 (+) | True | G185779 |
| TU211147 | lncRNA | downstream | 89566 | 3893279 ~ 3893481 (+) | True | G185914 |
| TU211148 | lncRNA | downstream | 89772 | 3893485 ~ 3893687 (+) | True | G185915 |
| TU211005 | lncRNA | downstream | 109597 | 3913310 ~ 3914476 (+) | True | G185788 |
| CI01000040_03789687_03800746.mRNA | mRNA | upstream | 1473 | 3789081 ~ 3800746 (+) | True | CI01000040_03789687_03800746 |
| CI01000040_03761247_03762668.mRNA | mRNA | upstream | 39545 | 3761161 ~ 3762674 (+) | True | CI01000040_03761247_03762668 |
| CI01000040_03297317_03298657.mRNA | mRNA | upstream | 503323 | 3296455 ~ 3298896 (+) | True | CI01000040_03297317_03298657 |
| CI01000040_03271519_03276006.mRNA | mRNA | upstream | 526179 | 3271063 ~ 3276040 (+) | True | CI01000040_03271519_03276006 |
| CI01000040_03212701_03215022.mRNA | mRNA | upstream | 587051 | 3212701 ~ 3215168 (+) | True | CI01000040_03212701_03215022 |
| CI01000040_03939728_03943493.mRNA | mRNA | downstream | 134595 | 3938308 ~ 3943624 (+) | True | CI01000040_03939728_03943493 |
| CI01000040_04047210_04060876.mRNA | mRNA | downstream | 243497 | 4047210 ~ 4061675 (+) | True | CI01000040_04047210_04060876 |
| CI01000040_04063098_04068134.mRNA | mRNA | downstream | 259234 | 4062947 ~ 4068198 (+) | True | CI01000040_04063098_04068134 |
| CI01000040_04369595_04374831.mRNA | mRNA | downstream | 564752 | 4368465 ~ 4375355 (+) | True | CI01000040_04369595_04374831 |
| CI01000040_04442810_04474877.mRNA | mRNA | downstream | 638084 | 4441797 ~ 4475124 (+) | True | CI01000040_04442810_04474877 |
| TU211111 | other | upstream | 62938 | 3738987 ~ 3739281 (+) | True | G185884 |
| TU210451 | other | upstream | 468236 | 3333578 ~ 3333983 (+) | True | G185296 |
| TU208940 | other | upstream | 2565730 | 1230292 ~ 1236489 (+) | True | G184003 |
| TU208979 | other | upstream | 2824056 | 974113 ~ 974246 (+) | True | G184034 |
| TU208290 | other | upstream | 3525364 | 197712 ~ 276855 (+) | True | G183418 |
| TU211185 | other | downstream | 170052 | 3973765 ~ 3974123 (+) | True | G185947 |
| TU212953 | other | downstream | 2165332 | 5969045 ~ 5971732 (+) | False | G187510 |
| TU212954 | other | downstream | 2165332 | 5969045 ~ 5971732 (+) | False | G187510 |
| TU212956 | other | downstream | 2165332 | 5969045 ~ 5971732 (+) | True | G187510 |
| TU213649 | other | downstream | 3004978 | 6808691 ~ 6809130 (+) | True | G188149 |
