RNA id: TU211193


Basic Information

Item Value
RNA id TU211193
length 242
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G185955
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 3989680 ~ 3989921 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGGTTACTATAATTTTTTACACAACCACTGCTACAGGTCACACTTTACATTACATTTCCAATGTTATTGTCTGTTTACTTGATTAAGGACTGGGTAAAACTAATGTATGCACTGTACAATATTTTGGCATTTACATTGATGCATTTGACAGACGTTTTTATCCAAAGAAACTTAGACTTCATTCAAGAATACATTTCTTTCAGTTTTTGTCTCTTGTGGGATTTGAACCCATGACCTTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211176 lncRNA upstream 22258 3967202 ~ 3967422 (+) True G185938
TU211008 lncRNA upstream 74220 3914585 ~ 3915460 (+) True G185791
TU211005 lncRNA upstream 75204 3913310 ~ 3914476 (+) True G185788
TU211148 lncRNA upstream 95993 3893485 ~ 3893687 (+) True G185915
TU211147 lncRNA upstream 96199 3893279 ~ 3893481 (+) True G185914
TU211201 lncRNA downstream 19147 4009068 ~ 4009291 (+) True G185959
TU211287 lncRNA downstream 224195 4214116 ~ 4226490 (+) True G186041
TU211304 lncRNA downstream 250145 4240066 ~ 4240279 (+) True G186057
TU211311 lncRNA downstream 262121 4252042 ~ 4252331 (+) True G186064
TU211286 lncRNA downstream 265066 4254987 ~ 4257290 (+) True G186040
CI01000040_03939728_03943493.mRNA mRNA upstream 46056 3938308 ~ 3943624 (+) True CI01000040_03939728_03943493
CI01000040_03789687_03800746.mRNA mRNA upstream 188934 3789081 ~ 3800746 (+) True CI01000040_03789687_03800746
CI01000040_03761247_03762668.mRNA mRNA upstream 227006 3761161 ~ 3762674 (+) True CI01000040_03761247_03762668
CI01000040_03297317_03298657.mRNA mRNA upstream 690784 3296455 ~ 3298896 (+) True CI01000040_03297317_03298657
CI01000040_03271519_03276006.mRNA mRNA upstream 713640 3271063 ~ 3276040 (+) True CI01000040_03271519_03276006
CI01000040_04047210_04060876.mRNA mRNA downstream 57289 4047210 ~ 4061675 (+) True CI01000040_04047210_04060876
CI01000040_04063098_04068134.mRNA mRNA downstream 73026 4062947 ~ 4068198 (+) True CI01000040_04063098_04068134
CI01000040_04369595_04374831.mRNA mRNA downstream 378544 4368465 ~ 4375355 (+) True CI01000040_04369595_04374831
CI01000040_04442810_04474877.mRNA mRNA downstream 451876 4441797 ~ 4475124 (+) True CI01000040_04442810_04474877
CI01000040_04475476_04499896.mRNA mRNA downstream 485391 4475312 ~ 4500113 (+) True CI01000040_04475476_04499896
TU211185 other upstream 15557 3973765 ~ 3974123 (+) True G185947
TU211111 other upstream 250399 3738987 ~ 3739281 (+) True G185884
TU210451 other upstream 655697 3333578 ~ 3333983 (+) True G185296
TU208940 other upstream 2753191 1230292 ~ 1236489 (+) True G184003
TU208979 other upstream 3011517 974113 ~ 974246 (+) True G184034
TU212953 other downstream 1979124 5969045 ~ 5971732 (+) False G187510
TU212954 other downstream 1979124 5969045 ~ 5971732 (+) False G187510
TU212956 other downstream 1979124 5969045 ~ 5971732 (+) True G187510
TU213649 other downstream 2818770 6808691 ~ 6809130 (+) True G188149
TU213711 other downstream 2848203 6838124 ~ 6838634 (+) False CI01000040_06833701_06848731

Expression Profile