RNA id: TU211201


Basic Information

Item Value
RNA id TU211201
length 224
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G185959
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 4009068 ~ 4009291 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTATAATCAAACACAGCTGGACTCAAATGAAGGTGTAGAACCATCTCAAGGATGATCAGAAGAAATGGACAGCACCTGAGTTAAATATATGATTGTCACAGCAAAGGGTCTGAATACTTAGGGTAATGTGATATTTCAGGTTTTCTTTTTTAATAAATCTGCAAATATCAACAATTCTGTGTTTTTCTGTCAATATGGGGTGCTGTGTGTACATTAATGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211193 lncRNA upstream 19147 3989680 ~ 3989921 (+) True G185955
TU211176 lncRNA upstream 41646 3967202 ~ 3967422 (+) True G185938
TU211008 lncRNA upstream 93608 3914585 ~ 3915460 (+) True G185791
TU211005 lncRNA upstream 94592 3913310 ~ 3914476 (+) True G185788
TU211148 lncRNA upstream 115381 3893485 ~ 3893687 (+) True G185915
TU211287 lncRNA downstream 204825 4214116 ~ 4226490 (+) True G186041
TU211304 lncRNA downstream 230775 4240066 ~ 4240279 (+) True G186057
TU211311 lncRNA downstream 242751 4252042 ~ 4252331 (+) True G186064
TU211286 lncRNA downstream 245696 4254987 ~ 4257290 (+) True G186040
TU211382 lncRNA downstream 400628 4409919 ~ 4410206 (+) True G186128
CI01000040_03939728_03943493.mRNA mRNA upstream 65444 3938308 ~ 3943624 (+) True CI01000040_03939728_03943493
CI01000040_03789687_03800746.mRNA mRNA upstream 208322 3789081 ~ 3800746 (+) True CI01000040_03789687_03800746
CI01000040_03761247_03762668.mRNA mRNA upstream 246394 3761161 ~ 3762674 (+) True CI01000040_03761247_03762668
CI01000040_03297317_03298657.mRNA mRNA upstream 710172 3296455 ~ 3298896 (+) True CI01000040_03297317_03298657
CI01000040_03271519_03276006.mRNA mRNA upstream 733028 3271063 ~ 3276040 (+) True CI01000040_03271519_03276006
CI01000040_04047210_04060876.mRNA mRNA downstream 37919 4047210 ~ 4061675 (+) True CI01000040_04047210_04060876
CI01000040_04063098_04068134.mRNA mRNA downstream 53656 4062947 ~ 4068198 (+) True CI01000040_04063098_04068134
CI01000040_04369595_04374831.mRNA mRNA downstream 359174 4368465 ~ 4375355 (+) True CI01000040_04369595_04374831
CI01000040_04442810_04474877.mRNA mRNA downstream 432506 4441797 ~ 4475124 (+) True CI01000040_04442810_04474877
CI01000040_04475476_04499896.mRNA mRNA downstream 466021 4475312 ~ 4500113 (+) True CI01000040_04475476_04499896
TU211185 other upstream 34945 3973765 ~ 3974123 (+) True G185947
TU211111 other upstream 269787 3738987 ~ 3739281 (+) True G185884
TU210451 other upstream 675085 3333578 ~ 3333983 (+) True G185296
TU208940 other upstream 2772579 1230292 ~ 1236489 (+) True G184003
TU208979 other upstream 3030905 974113 ~ 974246 (+) True G184034
TU212953 other downstream 1959754 5969045 ~ 5971732 (+) False G187510
TU212954 other downstream 1959754 5969045 ~ 5971732 (+) False G187510
TU212956 other downstream 1959754 5969045 ~ 5971732 (+) True G187510
TU213649 other downstream 2799400 6808691 ~ 6809130 (+) True G188149
TU213711 other downstream 2828833 6838124 ~ 6838634 (+) False CI01000040_06833701_06848731

Expression Profile