RNA id: TU211311


Basic Information

Item Value
RNA id TU211311
length 290
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G186064
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 4252042 ~ 4252331 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCCCCTATTACAGTACTGCATAGAGGGAGAATAAGAGAAATAGAGTAGGAGATGGGGAGGAGGAGGGATGCTGGAAGAATTGTCGCTGGGATGATGCAGTGACTGCTGCTTATATACGCTCGTAATGATGATTGACAGGACTGAATGTTTAGCCTCGTTTGGAACTACATTTAATGTCTGTAGTATTTCTTACCCAAATACTACTGTTAGACCCACCTTAAAAACTTACAGCCATGTTTATGTAATTTGTCTCTTTATTCTATGTTTGTGTGTGTGTTTTGAATGACGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211304 lncRNA upstream 11763 4240066 ~ 4240279 (+) True G186057
TU211287 lncRNA upstream 25552 4214116 ~ 4226490 (+) True G186041
TU211201 lncRNA upstream 242751 4009068 ~ 4009291 (+) True G185959
TU211193 lncRNA upstream 262121 3989680 ~ 3989921 (+) True G185955
TU211176 lncRNA upstream 284620 3967202 ~ 3967422 (+) True G185938
TU211286 lncRNA downstream 2656 4254987 ~ 4257290 (+) True G186040
TU211382 lncRNA downstream 157588 4409919 ~ 4410206 (+) True G186128
TU211270 lncRNA downstream 321480 4573811 ~ 4577465 (+) True G186026
TU211944 lncRNA downstream 415331 4667662 ~ 4670591 (+) True G186601
TU211975 lncRNA downstream 439029 4691360 ~ 4692423 (+) True G186632
CI01000040_04063098_04068134.mRNA mRNA upstream 183844 4062947 ~ 4068198 (+) True CI01000040_04063098_04068134
CI01000040_04047210_04060876.mRNA mRNA upstream 190367 4047210 ~ 4061675 (+) True CI01000040_04047210_04060876
CI01000040_03939728_03943493.mRNA mRNA upstream 308418 3938308 ~ 3943624 (+) True CI01000040_03939728_03943493
CI01000040_03789687_03800746.mRNA mRNA upstream 451296 3789081 ~ 3800746 (+) True CI01000040_03789687_03800746
CI01000040_03761247_03762668.mRNA mRNA upstream 489368 3761161 ~ 3762674 (+) True CI01000040_03761247_03762668
CI01000040_04369595_04374831.mRNA mRNA downstream 116134 4368465 ~ 4375355 (+) True CI01000040_04369595_04374831
CI01000040_04442810_04474877.mRNA mRNA downstream 189466 4441797 ~ 4475124 (+) True CI01000040_04442810_04474877
CI01000040_04475476_04499896.mRNA mRNA downstream 222981 4475312 ~ 4500113 (+) True CI01000040_04475476_04499896
CI01000040_04503393_04506409.mRNA mRNA downstream 249392 4501723 ~ 4506409 (+) True CI01000040_04503393_04506409
CI01000040_04539382_04571810.mRNA mRNA downstream 286619 4538950 ~ 4571966 (+) True CI01000040_04539382_04571810
TU211185 other upstream 277919 3973765 ~ 3974123 (+) True G185947
TU211111 other upstream 512761 3738987 ~ 3739281 (+) True G185884
TU210451 other upstream 918059 3333578 ~ 3333983 (+) True G185296
TU208940 other upstream 3015553 1230292 ~ 1236489 (+) True G184003
TU208979 other upstream 3273879 974113 ~ 974246 (+) True G184034
TU212953 other downstream 1716714 5969045 ~ 5971732 (+) False G187510
TU212954 other downstream 1716714 5969045 ~ 5971732 (+) False G187510
TU212956 other downstream 1716714 5969045 ~ 5971732 (+) True G187510
TU213649 other downstream 2556360 6808691 ~ 6809130 (+) True G188149
TU213711 other downstream 2585793 6838124 ~ 6838634 (+) False CI01000040_06833701_06848731

Expression Profile