Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU212956 |
| length | 2478 |
| RNA type | TUCP |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G187510 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000040 |
| NCBI id | null |
| chromosome length | 6879596 |
| location | 5969045 ~ 5971732 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU213032 | lncRNA | upstream | 107652 | 5860973 ~ 5861393 (+) | True | G187572 |
| TU213031 | lncRNA | upstream | 108154 | 5860687 ~ 5860891 (+) | True | G187571 |
| TU213030 | lncRNA | upstream | 108385 | 5860416 ~ 5860660 (+) | True | G187570 |
| TU213012 | lncRNA | upstream | 140586 | 5828241 ~ 5828459 (+) | True | G187552 |
| TU213003 | lncRNA | upstream | 153406 | 5815254 ~ 5815639 (+) | True | G187543 |
| TU212939 | lncRNA | downstream | 4373 | 5976105 ~ 5978107 (+) | True | G187506 |
| TU213058 | lncRNA | downstream | 77387 | 6049119 ~ 6049319 (+) | True | G187598 |
| TU213060 | lncRNA | downstream | 78965 | 6050697 ~ 6050915 (+) | True | G187600 |
| TU213114 | lncRNA | downstream | 183674 | 6155406 ~ 6155640 (+) | True | G187654 |
| TU213115 | lncRNA | downstream | 184326 | 6156058 ~ 6156275 (+) | True | G187655 |
| CI01000040_05964504_05968388.mRNA | mRNA | upstream | 286 | 5963762 ~ 5968759 (+) | True | CI01000040_05964504_05968388 |
| CI01000040_05869960_05902405.mRNA | mRNA | upstream | 66555 | 5869960 ~ 5902490 (+) | True | CI01000040_05869960_05902405 |
| CI01000040_05794612_05852452.mRNA | mRNA | upstream | 116446 | 5794389 ~ 5852599 (+) | True | CI01000040_05794612_05852452 |
| CI01000040_05782367_05787040.mRNA | mRNA | upstream | 180843 | 5782367 ~ 5788202 (+) | True | CI01000040_05782367_05787040 |
| CI01000040_05709800_05729451.mRNA | mRNA | upstream | 239587 | 5709800 ~ 5729458 (+) | True | CI01000040_05709800_05729451 |
| CI01000040_05973152_05974880.mRNA | mRNA | downstream | 1420 | 5973152 ~ 5975217 (+) | True | CI01000040_05973152_05974880 |
| CI01000040_05993175_06032007.mRNA | mRNA | downstream | 21443 | 5993175 ~ 6032178 (+) | True | CI01000040_05993175_06032007 |
| CI01000040_06055205_06060690.mRNA | mRNA | downstream | 82707 | 6054439 ~ 6061463 (+) | True | CI01000040_06055205_06060690 |
| CI01000040_06201260_06214301.mRNA | mRNA | downstream | 229528 | 6201260 ~ 6214478 (+) | True | CI01000040_06201260_06214301 |
| CI01000040_06217078_06217587.mRNA | mRNA | downstream | 245199 | 6216931 ~ 6218148 (+) | False | CI01000040_06217078_06217587 |
| TU211185 | other | upstream | 1994922 | 3973765 ~ 3974123 (+) | True | G185947 |
| TU211111 | other | upstream | 2229764 | 3738987 ~ 3739281 (+) | True | G185884 |
| TU210451 | other | upstream | 2635062 | 3333578 ~ 3333983 (+) | True | G185296 |
| TU208940 | other | upstream | 4732556 | 1230292 ~ 1236489 (+) | True | G184003 |
| TU208979 | other | upstream | 4990882 | 974113 ~ 974246 (+) | True | G184034 |
| TU213649 | other | downstream | 836959 | 6808691 ~ 6809130 (+) | True | G188149 |
| TU213711 | other | downstream | 866392 | 6838124 ~ 6838634 (+) | False | CI01000040_06833701_06848731 |
