RNA id: TU213649


Basic Information

Item Value
RNA id TU213649
length 440
RNA type TUCP
GC content 0.48
exon number 1
gene id G188149
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 6808691 ~ 6809130 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGAGTTGGCCCACCCTTTGCAGCTATTACAGCTTCAACTCTTCTGGGAAGGATTTCCACAAGGTTTAGGAGTGTGTTTATGGGAATTTTTGACCATTCTTCTAGAAGCGCATTTGTGAGGTCAGGCACTGATGTTGGACAAGAAGGCCTGGCTCGCAGTCTCCGCTCTAATTTATCCCAAAAGTGTTCTATCGGGTTGAGGTCAGGACTCCAGTCAAGTTCCTCCACACCAAACTCGCTCATCCATGTCTTTATGGACCTTGCTTTGTGCACTGGTGCGCAGTCATGTTGGAAAAGGAAGGGGCCATCCCCAAACTGTTCCCACAAAGTTGGGAGCATGAAATCATCCAAAATGTCTTGGTATGCTGAAGCATTAAGAGTTCCTTTCACTGGAACTAAGGGGCCAAGCCCAAAAAACAACCCCACACCATAATTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213652 lncRNA upstream 44185 6760834 ~ 6764506 (+) True G188152
TU213656 lncRNA upstream 121109 6687310 ~ 6687582 (+) True G188156
TU213587 lncRNA upstream 159352 6649107 ~ 6649339 (+) True G188102
TU213251 lncRNA upstream 169081 6639393 ~ 6639610 (+) True G187788
TU213206 lncRNA upstream 255318 6553106 ~ 6553373 (+) True G187743
TU213697 lncRNA downstream 1255 6810385 ~ 6810799 (+) True G188192
TU213700 lncRNA downstream 12507 6821637 ~ 6821892 (+) True G188195
TU213702 lncRNA downstream 14344 6823474 ~ 6823736 (+) True G188197
TU213703 lncRNA downstream 14846 6823976 ~ 6824331 (+) True G188198
TU213704 lncRNA downstream 16974 6826104 ~ 6826394 (+) True G188199
CI01000040_06787406_06804047.mRNA mRNA upstream 4607 6787406 ~ 6804084 (+) True CI01000040_06787406_06804047
CI01000040_06707788_06710457.mRNA mRNA upstream 97101 6707788 ~ 6711590 (+) True CI01000040_06707788_06710457
CI01000040_06514889_06518461.mRNA mRNA upstream 289961 6514889 ~ 6518730 (+) True CI01000040_06514889_06518461
CI01000040_06461477_06485579.mRNA mRNA upstream 322527 6461385 ~ 6486164 (+) True CI01000040_06461477_06485579
CI01000040_06433752_06454833.mRNA mRNA upstream 353813 6433752 ~ 6454878 (+) True CI01000040_06433752_06454833
CI01000040_06833701_06848731.mRNA mRNA downstream 23857 6832987 ~ 6849135 (+) False CI01000040_06833701_06848731
TU212953 other upstream 836959 5969045 ~ 5971732 (+) False G187510
TU212954 other upstream 836959 5969045 ~ 5971732 (+) False G187510
TU212956 other upstream 836959 5969045 ~ 5971732 (+) True G187510
TU211185 other upstream 2834568 3973765 ~ 3974123 (+) True G185947
TU211111 other upstream 3069410 3738987 ~ 3739281 (+) True G185884
TU213711 other downstream 28994 6838124 ~ 6838634 (+) False CI01000040_06833701_06848731

Expression Profile