RNA id: CI01000043_00529899_00530472.mRNA



Basic Information


Item Value
RNA id CI01000043_00529899_00530472.mRNA
length 662
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000043_00529899_00530472
representative True

Chromosome Information


Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 529848 ~ 530885 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTATAAAATTACTTGACAAATTAACATTGTGTTTTAGAACCATGTAAAACTATGGTAACTGGTGGTACACAGGAGAGGAATCTTGTTCTGATCCATGCTGATGTCATTAGTGCCTGCACTCTGGGATGTTTGACAGGGGTATCTGCTATTTGTGCTGATAATGGAGGAATGGAGGTGCCCAGAAGTGGTGTGGGGGAAGAAGAGAAGATATTTGACCTTCTGGTGTTGGTGTTGCAGGCCTCTGTATAGCAGTAAGGGGACTGTATGGTCTACATAGTTAGTATAATTCTGGTTCCACATCCTCCCGAGTCATATTCATGTTCACTGGTTTATCAGTATATATAGGCGATCCACACTCCAATCCAGAAGGGGGCATACATGGTAATACAACAATGTTTGCTAACCGCTACAACAGGAAAAAGAGCAGAAGAACAGCGCATACGCGAATGACTTGAGCACATGAAAACAAAGTCAACAAGGCAGTGTGCATGTGTCGAATGAATCTTTCTGCACTCATGGACAAAGGAGAATACTTTGAAAGGCTCGCACACTCAACTGTGCATGAAACGTAGCGAAACGCGGGAAATTAAAGTATAGGAGAGTTGGGCTTAAGCTTTGAATGTTTACATATATTTTAACTGGAGCAAATTGTGACACTCCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU215005 lncRNA upstream 2267 525720 ~ 527581 (+) True G189289
TU215004 lncRNA upstream 91609 437503 ~ 438239 (+) True G189288
TU214995 lncRNA upstream 99129 427230 ~ 430719 (+) True G189281
TU215056 lncRNA upstream 115148 413873 ~ 414700 (+) False G189340
TU215058 lncRNA upstream 115148 413873 ~ 414700 (+) True G189340
TU215101 lncRNA downstream 32769 563654 ~ 565387 (+) True G189383
TU215103 lncRNA downstream 32960 563845 ~ 595280 (+) True G189384
TU215095 lncRNA downstream 54399 585284 ~ 587468 (+) True G189377
TU215094 lncRNA downstream 59203 590088 ~ 591256 (+) True G189376
TU215092 lncRNA downstream 72016 602901 ~ 603278 (+) True G189374
CI01000043_00449493_00494730.mRNA mRNA upstream 35118 449493 ~ 494730 (+) True CI01000043_00449493_00494730
CI01000043_00372873_00405272.mRNA mRNA upstream 124423 372873 ~ 405425 (+) True CI01000043_00372873_00405272
CI01000043_00176126_00193756.mRNA mRNA upstream 335662 176076 ~ 194186 (+) True CI01000043_00176126_00193756
CI01000043_00174845_00175959.mRNA mRNA upstream 353783 172295 ~ 176065 (+) True CI01000043_00174845_00175959
CI01000043_00093397_00132783.mRNA mRNA upstream 396375 92844 ~ 133473 (+) True CI01000043_00093397_00132783
CI01000043_00613106_00620046.mRNA mRNA downstream 82221 613106 ~ 620487 (+) True CI01000043_00613106_00620046
CI01000043_00670862_00685333.mRNA mRNA downstream 138608 669493 ~ 686239 (+) True CI01000043_00670862_00685333
CI01000043_00700044_00705027.mRNA mRNA downstream 168252 699137 ~ 705201 (+) True CI01000043_00700044_00705027
CI01000043_00713100_00730032.mRNA mRNA downstream 182215 713100 ~ 732043 (+) True CI01000043_00713100_00730032
CI01000043_00732508_00746912.mRNA mRNA downstream 201623 732508 ~ 748167 (+) True CI01000043_00732508_00746912
TU216107 other downstream 1152671 1683556 ~ 1692479 (+) True G190241
TU216143 other downstream 1910977 2441862 ~ 2443710 (+) True G190272
TU217666 other downstream 3372348 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 3777063 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 4462128 4993013 ~ 4993356 (+) True G192454

Expression Profile