RNA id: CI01000043_00825755_00838325.mRNA



Basic Information


Item Value
RNA id CI01000043_00825755_00838325.mRNA
length 3085
RNA type mRNA
GC content 0.40
exon number 6
gene id CI01000043_00825755_00838325
representative True

Chromosome Information


Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 825660 ~ 838591 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAATAAGAAAAGAAGTAATAGGCTAATGCTACTCAGTGTCTGAATTTCAAGTGTTTAACATCTTTTGACAGATTGTAATGAGTATTTGAAGATCCATGGCATTCCAGTTCCAAGTAGCAGTTCCGGTTCCAGTTCCAGTTTCAGCAGGACCTAGAAAAACAGACCCCATAATAAAATGCATCATAGACAACAAGGCAGAGAGACTTCAGAAATTATTAAAAGGCAGAGATATTAATGGTTTGTACTCTTCTGAAGTCTGGAATGATGATGTTACACCATTAACAGCAGCAGTTATATGCAGAAATGAAGAGATCTGCTCTTATCTGCTTGAAGAGTCGGCTGATCCAAACAAACCCTCAACAAATGGACTAACACCTCTACAATATGCTGCTTTCACAATTGGAGTTCCATTGAGTATTGTGAAAAGATTACTTTCTGCAAAAGCTAACCCAAATGGACATGGATTACAAATTTTTACTCCATTGCAATATGCTGTTGATCATGGCCATGAAGACATTGTGAAAGCACTTATAGAAGCTGGAGCTTCACCTTTAAGGAACTATGGGATGAATCCAGAACTTGATAAAAAAGTGGAGAGAATGATTTGTCATCTATCCTCACAGGGTGAAGTGTCTGAGAAAAAATATATATCTTTCTCTTTTCCTTGTGCTGTACAAAAGAAAAATCAGACAGAAGTTTACAGACTCTTTAAGGAACATTTCTTTCAAGAGGATCCTTTTGATCATTTGATTTATTTTGAGCACTATTTTAGTGTCATTGGTCCAAGTTCAGAGCAGTACCGTCAGAGCGCCATCAAGTGGTTAAAAGATACAAAGAGTGCGGACAGATACATTGAGGGACTCATCAAGCGCTTTCCAAGGATCCTTCAGGAACACTGGCCGATTGTACTGAACTGCTTAAAAATTGCTTTGTGTGTCAGTGAAAACATCTCTCCTCAGGTATTCAGTGAGCTTGTGCCAATTCTAACAATCAGACTTCAGCACTTTGGAAATCCAAACGGTGAAACAGTCAATCTTTTGATACTCAAAATACTCAATGTTATGATGCAGAAGACGTCTGAGCAGAAACTGAGATTGAACCATTCTGTCTATGAGAAGTTATGCAAAAGTCTGTTGCCTCTCACACTTCCTGATTATTCAAGTTTAATTGGAATGTGGACATATAGTTTCTTTGCCTACATAAATGACTTTAATCCTGAACTTGTGGCATTGTATGGATTGACTTCAGTCCCAGAGATGATACTTAACACTGCAGAGATAGAAGATGAAGCCATAAACAGAAAGCTACAAAATCTGAACATATCACTCAAACATCCATCAGGTGCGAGGGATAGTTTACATGAGGAGATGGCTGCTCCTTCAAAGAGCAGGAAAAAGAAGAAAAAGAAGAAAAAAATCCAGCAAGAAGTGGGATCACAAGAAGGTGGGCTGCAAGATAAAGAGGAGCCGTATTCAGACACTGTAGTAAAATCCATTGAGGAATCAAACTCAAGTGTGCAGCCGTTTACACCGCCTGCTGAGAACCAAAATTTCTCAAAAAGGTGGGTTCAGACCAGCTGTCGTTGGAGACCCAAGCTTGAGAAGCTAGCTAACATGGATGTTAGCAATACCTATAGGCTGGGAAATGGTAGGCTTACTCTTGTACTCAGTGATGAATTTCAGATTGCTAAAGGAAGTGATGGAACAGAAGTTTTTCTTGGTTTGAGGGATGACGGCACAGAGGTGGCTGTGAAACGAATGATTAAGTCCAATTATCAGGTCCTCAAAAACGAGGAGGAATTTCTACGACTTCCACAGCTTGATAATCCCTCCATTGTGCGATATGTGGACTTCGCTGAAGATGACCATTTTGGATATCTTGCTCTTCAGCTTTGTGAGTACACACTGGAGGAATATATCCAAGAGCATTTACCAGATGATTCTGCTGAGAGAAGTTTGGTTCTGAAGAAGCTGGTGAGGGAAGTTCTCTACAGTTTACAGGTTTTACACCAACCACAGACCAAAGTGCTTCATCGGGACATCAAACCCCAGAATGTTCTGATTGACATAAATGGAAAAGCTAGATTGGCTGATTTTGGCATAAGTCGTCGACTGAACTTAAGCCAAACGACTTTACGAACAAGCATTGCTGGAACTAGATGCTGGAAGGCAAAGGAGAGCATAGATGAGGAGGTCAACATTGGGTACAAGAGGAGCTCTGACATTCAGGTTGCTGGGATGTTGGTGTACTACATTCTCTCTAGAGGACACCATCCATTTGGTAAAGGTCCATTTTGTGAAGTCAACATTCTACAAGGAAGATACTCACTGGAACATCTGGATGATGATGTAGCGAAGGATCTCATCGAGTGGATGATCAATGAAGATCCAAACAACAGACCAACTGTGGAGCAGACCCTTGCACACCCCTTCTTCTGGACTGATGAAAGGAGAGTGGAGTATTTGAAAAAAATGGGGAACCAGAATGAAACCGGGAGCTATCGTAATGTTGATGAGGAGCTCCTTCATGCTATTGAAAAATACACAGAGAGGAAAAGCTTTTCTGAATGGAAAACTAAACTGCCTTCTGAGCTTGTCCAGAAACTGGATGGTAAGAAGAAAGCCTATCCTGAGAACACACTGGGCCTGCTGCGTTTTATACGCAACCTACACGAGCATTATCCAGATGACGCAGAGAGCATCAACCTGATGGATTCATTCCCTGATCTCTTTGGGAGTGTGTTCAGGCTTGCAAAGGAGAGAGGATGGAACTCCAGGGCGAGTCTGAAGAAGTTCTTCAGCTCAGTTCATCAGATTTGATTGTTTTTATTTTTGGTTACAATATGTACATTGATTTTGCATCATGAAGGTATTTTATGAATGAGTTTAAATGTAGCGACAGATGTAAGAAGACCAAAGATCCATTGTTTTTTGGGAAATGAGGCCCTAACAACTAAAAACATTGACAGTTAAGGAGGCACAATATAAAAAAAACAAAAGTCAGTAGTACATTTTTAAACAGTAATTTAGTTCTTGCTTTATCCTGTGGAAAATATGTAAATATCTCACAGAGCAACCTGAAGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU215241 lncRNA upstream 6157 817771 ~ 819503 (+) True CI01000043_00814611_00818100
TU215137 lncRNA upstream 135900 687473 ~ 689760 (+) True G189413
TU215140 lncRNA upstream 138279 687003 ~ 687381 (+) True G189416
TU215151 lncRNA upstream 160979 658279 ~ 664681 (+) True G189425
TU215129 lncRNA upstream 185782 639576 ~ 639878 (+) True G189410
TU215280 lncRNA downstream 11207 849798 ~ 855569 (+) True G189528
TU215282 lncRNA downstream 15896 854487 ~ 854813 (+) True G189530
TU215307 lncRNA downstream 79819 918410 ~ 919428 (+) True G189552
TU215309 lncRNA downstream 82256 920847 ~ 921240 (+) False G189554
TU215311 lncRNA downstream 82256 920847 ~ 921656 (+) False G189554
CI01000043_00814611_00818100.mRNA mRNA upstream 6139 814552 ~ 819521 (+) False CI01000043_00814611_00818100
CI01000043_00776707_00791897.mRNA mRNA upstream 33729 776241 ~ 791931 (+) False CI01000043_00776707_00791897
CI01000043_00755986_00763327.mRNA mRNA upstream 61714 755841 ~ 763946 (+) True CI01000043_00755986_00763327
CI01000043_00732508_00746912.mRNA mRNA upstream 77493 732508 ~ 748167 (+) True CI01000043_00732508_00746912
CI01000043_00713100_00730032.mRNA mRNA upstream 93617 713100 ~ 732043 (+) True CI01000043_00713100_00730032
CI01000043_00872741_00876715.mRNA mRNA downstream 34150 872741 ~ 876985 (+) True CI01000043_00872741_00876715
CI01000043_00878804_00886856.mRNA mRNA downstream 40213 878804 ~ 886970 (+) True CI01000043_00878804_00886856
CI01000043_00898380_00913554.mRNA mRNA downstream 59789 898380 ~ 913647 (+) True CI01000043_00898380_00913554
CI01000043_00930835_00959810.mRNA mRNA downstream 91738 930329 ~ 960211 (+) True CI01000043_00930835_00959810
CI01000043_01366462_01369312.mRNA mRNA downstream 527871 1366462 ~ 1369887 (+) False CI01000043_01366462_01369312
TU216107 other downstream 844965 1683556 ~ 1692479 (+) True G190241
TU216143 other downstream 1603271 2441862 ~ 2443710 (+) True G190272
TU217666 other downstream 3064642 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 3469357 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 4154422 4993013 ~ 4993356 (+) True G192454

Expression Profile