RNA id: CI01000043_02725571_02730393.mRNA



Basic Information


Item Value
RNA id CI01000043_02725571_02730393.mRNA
length 1294
RNA type mRNA
GC content 0.50
exon number 3
gene id CI01000043_02725571_02730393
representative True

Chromosome Information


Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 2725152 ~ 2730860 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAATCTCTAACATCCTATGGCTGTCTATTTTTTCTGGAGCCTTCTCTTTTCACTTTTTTTTGCTTTCATTCTTTTCTTTTAAGACGAAACGGGAGCTGGGTGCTGATAGTGATAGATGGCTCAGCGCTCTAACACTTTATCCAATTCAGTGCAGATTTCATCCAATAAAGAATCACTTGTGCACTCTCAAACTAAATGGAAGTCAGGCAGCGGAGAGAAAGGGGCTGCGGTTTGTTTCTGAGCTGCGAAAATCAAATTTTCTTAAAGCTGCCGCGGCAGTGGCTCGCAGAAAAAGCAGCAACAGCCATGACTGGCCGGGGCCACAGCCGTCTGCACACACAATTTAATCCATCACAGAGCGCCTGACACCACATCAATCAAGCTTTCATCAGCATGGACCCCAAAAACTATATTTCCATTCACCCACTCCTAACTGGGCCAAAGCCAGGCCCCTGCTGGCCAATAGCATGGACCGGGAGGCCCCCGACCAGACAGGACCATGTAGCACCACCTACGGCACTCACGCACAGGCATACCCTCAGCCAGCAGGTCGGTCGGACATTCGCACACACGGGCCGCTTTTATACGGGACCTTGGTCTACCTGATATCTCTCAACTGGTCCTGTCCCAGAACAGGGAAGTGGTGGGGGCTTTCTTCATTACACCATGACAGACTTCCTCCCAAACCCGACGTGCCACCGCCGTCCTGCATGTATATGGGTTTTAATGATCTCCCCACTGCTGCGGCATGGCCTGACAAAGGGATTGCGGATGGGTTGACAGGATCAGTCATTGCAGATGGCACATTCCTCGGTGCAGCGGCAGGCCGCGTGGAACTGCAGCCTGACGCCTCCAATAGGGCGACAGGCCTTTGAGTTTGAGACAAACCCGGAACGTCACTGCCAGTTTGGGGGAGTCACTGGGTCTGACAGCCCTCCGCCATCATTTCAGTGCTGCCTCTTCCCTTACGACTGCACCAGAGCTGGCCAAATTGGTCGATTTCAACCCCTGCTTGATGCTGCTTTTAAAGATCCAAGACAAACATACAAGCAACCAGATCCCCCACTTAGGATTGGGTTTCTACAAAATATAGACCCTTATCACACGCGATAAATAATTCAGATGCAGCAAAATCGGACTTTGTAAAATGTTTATTGATACGGCATGGGCGGTGTCAGACCGGTGACATGGATATTGATAACGCCATCTGAGCACATGACTCGGGGGCGGGAGGGGTGAATGAAAGATGCATGATGACTCCAGAAAGAAAGACGGAGAATAGTGCATAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU216789 lncRNA downstream 130560 2594314 ~ 2594592 (-) True G190873
TU216785 lncRNA downstream 176852 2548070 ~ 2548300 (-) True G190869
TU216777 lncRNA downstream 197459 2527180 ~ 2527693 (-) True G190861
TU216765 lncRNA downstream 229464 2495474 ~ 2495688 (-) True G190849
TU216763 lncRNA downstream 230620 2494309 ~ 2494532 (-) True G190847
TU217255 lncRNA upstream 149536 2880396 ~ 2884547 (-) True G191299
TU217460 lncRNA upstream 419971 3150831 ~ 3151071 (-) True G191483
TU217466 lncRNA upstream 437037 3167897 ~ 3168172 (-) True G191489
TU217468 lncRNA upstream 439510 3170370 ~ 3170592 (-) True G191491
TU217483 lncRNA upstream 479877 3210737 ~ 3213930 (-) True G191506
CI01000043_02555479_02574821.mRNA mRNA downstream 150331 2555274 ~ 2574821 (-) True CI01000043_02555479_02574821
CI01000043_02443106_02445250.mRNA mRNA downstream 278845 2442964 ~ 2446307 (-) True CI01000043_02443106_02445250
CI01000043_02302020_02310202.mRNA mRNA downstream 414950 2301573 ~ 2310202 (-) True CI01000043_02302020_02310202
CI01000043_02267429_02272738.mRNA mRNA downstream 452414 2267201 ~ 2272738 (-) True CI01000043_02267429_02272738
CI01000043_02252982_02264248.mRNA mRNA downstream 460904 2251846 ~ 2264248 (-) True CI01000043_02252982_02264248
CI01000043_02868129_02876445.mRNA mRNA upstream 136556 2867416 ~ 2876465 (-) True CI01000043_02868129_02876445
CI01000043_02912881_02924260.mRNA mRNA upstream 182016 2912876 ~ 2924415 (-) True CI01000043_02912881_02924260
CI01000043_03133480_03136057.mRNA mRNA upstream 402569 3133429 ~ 3136325 (-) True CI01000043_03133480_03136057
CI01000043_03138222_03139281.mRNA mRNA upstream 406306 3137166 ~ 3139633 (-) True CI01000043_03138222_03139281
CI01000043_03325623_03351622.mRNA mRNA upstream 594528 3325388 ~ 3353062 (-) True CI01000043_03325623_03351622
TU216373 other downstream 475672 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 1841984 825737 ~ 883168 (-) False G189881
TU215686 other downstream 1841984 871379 ~ 883168 (-) True G189881
TU215690 other downstream 1849938 814747 ~ 875214 (-) False G189881
TU217252 other upstream 317512 3048372 ~ 3049864 (-) True G191296
TU218131 other upstream 1601051 4331911 ~ 4332726 (-) True G192109
TU219083 other upstream 2725637 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 2862821 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 3524712 6255572 ~ 6256279 (-) True G193313

Expression Profile