RNA id: CI01000043_02787002_02807892.mRNA



Basic Information


Item Value
RNA id CI01000043_02787002_02807892.mRNA
length 2151
RNA type mRNA
GC content 0.42
exon number 8
gene id CI01000043_02787002_02807892
representative True

Chromosome Information


Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 2786832 ~ 2808856 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATATATGTGTGTGTGTGTGTGTGCAGTGGAGCTGGGACTGCTGCGTGGTGTTGGCTGAAAGTATTGATTGTAAGAGAGTTTGTGGGGAGTGCACGCTTGTTTGATCCTGCCAGGTGCGAGCGTTGGCTTGTTGGGGGGCTTTGGATTCAGGAGCAGGCCAACTGCCATGACAAGTGTCTGCAAGTTCACAGGTGCCATGTCGCAGGTTTTATGTGTGCGAAAGCCAAAAATGTCTCGCGTTTGCACCGTTATAGATCTGATTGAGTCAGAAACGGGGTGTTCTTGTGTCTCAGTTGGTCTCTATATTCGTTCAAGTGGGTGGCTGTATCAGTACCTGGGATCTCAGCTTGGCCTGCTTGTGTCAGGGGAGAGAGAGAAAGACACGTGGATGTTCTGGTTGGAGATGTGCAGCATGGCTTATCTGAGTTGCTGGATTTTTAAAGGATTTCGCAATATTTCAGTTGAGGGTCTGAGGAGCGATCGCGCCGTCTGGGGCAAATACAGATGGTCATCTCGCATCTCATTCCATCTGATTACTGCAATCATGTGGATAATCCTCATCAAGCTCTCGTGTCTGGGCTTCTGTGATACACTCGTACTGTACGTGGAGCCAGATCAAACGAGAGCTTTGGCTTTCCAGCCATCTCGGTTTATTTTCTATGTCACTGATATCCAAGGGGCTTATTACTTTACCTTCTTTGTCTTCCCCTCGTCCACCTCTTTTCCATTTTTGAGAAGCACCGAGAGGAAGAGAGAGGGCTGTCTTGCACCTCGGAAAAGCGTTCGGATCATTTCTGTAGTTTTACACTCAACCACTGCACCATGTCAACGGAGCCCAGCCATCTGCCTGCGTGCCGCTCTACTTGGCATAACAGGCTGGCGTTATGGCAACAAGTGTCTCTTTCCGCATTGCCACACTCACCAGCCCTGCAAACTTGGCAGCCAGCCTGCCCGTTTGCCCGCCCCCGTCTGTGAGGAAACGAGGAAAGGGATTTTGCAGCTGCTCTTCGTCGACTGTTGTGTCCGTATAGTGCATTTAGCTAGGAGAGTGAATTATCACTGTGGCAGAGACGTTTGTGCAGGTTTAGATGTGACAGTATATCTAAAAGAGCTCACTACAATATCGATCTCTCACACTGGAGTCGTTTGCCATGTGCTATTCCTGGCCTCTGTCACTCACTGAGAATTATGGGTAAAAAATGGGATGCCACTGCATGATAAAATGTCACATCGTTTCAAGCAAGTAAAGGAAACCGAGTTCATTTATGCACTCATAAACCACAGCGCTGTGATGGCAATTTTTTTGACGTTAGAGCACAAATGTTTGTAATAAGCAGTGTTGGGGAAAGTTACTTTTAAAAAAGTAACTAATTTACTCCCTAAAAAAGTAACTAATTGCTTTACATTACTTTAGCGTTACTTTTTCTCACCTGGGCTGGACTTGCTTGTTTGTTTTTTAATAGCAACAAAAAAAGTTCTATTTTTGGCAAATGTTACTTTCACACCAAAAGTGAAATGAATAAGCCTCAGGCTGAAGGAAATACATATTTACACCTGTACAGTAGAGGGCGCAGCTCAAACAAACCTGTGCTGCCGTTCTGGATTGAAGAAGAATAGGATACAGGAGAAGGAAGTTCAACACTCTTATTTCTAAATCTAATCTAAAGTCATTTTTACTTATTAGTATGGTTGAATTAGATCACTGAAGGTCAGCAGCAAAGACATTGGTTAATAAAGTGAGATTAAATACATAATGTATATTTTTGTAATTTAATATAGTTAATTATTACAGGTTTACGTAAAATTCTGAGATTGTATTTTACTGTTTTTATTCATTTTGAGGAATACTGAATGTGTTTTTGTGCAAGTGAGATGAGTAAATTCATGTTCACATTTAGTCTAGAACTACAATAACCATCATGTTCATACAGCGCACACAACACCTCTGAACTTTATTTTTCTCAACATGCGGACAAGAGAGCTGTCAGTCAATAAATGTGAAAAAGTATCTCGAGTTACTCATTTGAAAAAGTAACTTAGATATTTTGTAAATTGAAAAATTAAAGCGTTACTATACTAGTTACTTGAAAAAGTAATCTGATTACGTATCTTCAGTTACTTGTAAAGCATTAACCACACCACTGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU216909 lncRNA upstream 11017 2775608 ~ 2775815 (+) True G190991
TU216800 lncRNA upstream 173355 2612695 ~ 2613477 (+) True G190884
TU216286 lncRNA upstream 234464 2552123 ~ 2552368 (+) True G190408
TU216279 lncRNA upstream 285772 2500774 ~ 2501060 (+) True G190401
TU216269 lncRNA upstream 336556 2449941 ~ 2450276 (+) True G190391
TU216997 lncRNA downstream 289475 3098331 ~ 3098964 (+) True G191058
TU217002 lncRNA downstream 298356 3107212 ~ 3107703 (+) True G191063
TU217003 lncRNA downstream 298855 3107711 ~ 3107958 (+) True G191064
TU217005 lncRNA downstream 299793 3108649 ~ 3108990 (+) True G191066
TU217006 lncRNA downstream 300183 3109039 ~ 3109292 (+) True G191067
CI01000043_02504537_02519367.mRNA mRNA upstream 266200 2501923 ~ 2520632 (+) True CI01000043_02504537_02519367
CI01000043_02464522_02485377.mRNA mRNA upstream 300522 2464522 ~ 2486310 (+) True CI01000043_02464522_02485377
CI01000043_02375390_02413694.mRNA mRNA upstream 373039 2375390 ~ 2413793 (+) True CI01000043_02375390_02413694
CI01000043_02335484_02351163.mRNA mRNA upstream 435448 2335484 ~ 2351384 (+) True CI01000043_02335484_02351163
CI01000043_02278110_02287253.mRNA mRNA upstream 498758 2276621 ~ 2288074 (+) True CI01000043_02278110_02287253
CI01000043_02834135_02840882.mRNA mRNA downstream 23193 2832049 ~ 2841013 (+) True CI01000043_02834135_02840882
CI01000043_02884506_02898339.mRNA mRNA downstream 75562 2884418 ~ 2898364 (+) True CI01000043_02884506_02898339
CI01000043_02945803_03044928.mRNA mRNA downstream 136947 2945803 ~ 3044928 (+) True CI01000043_02945803_03044928
CI01000043_03157095_03221503.mRNA mRNA downstream 347861 3156717 ~ 3222623 (+) True CI01000043_03157095_03221503
CI01000043_03270751_03284680.mRNA mRNA downstream 461895 3270751 ~ 3284762 (+) True CI01000043_03270751_03284680
TU216143 other upstream 343122 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 1094353 1683556 ~ 1692479 (+) True G190241
TU217666 other downstream 1094377 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 1499092 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 2184157 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 2305030 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 2360749 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795

Expression Profile