RNA id: CI01000043_02884506_02898339.mRNA



Basic Information


Item Value
RNA id CI01000043_02884506_02898339.mRNA
length 1007
RNA type mRNA
GC content 0.51
exon number 5
gene id CI01000043_02884506_02898339
representative True

Chromosome Information


Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 2884418 ~ 2898364 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAGAACAAACGGAAATGTGGATCCATAACAATGATACAATGTAGCCCACAGTGAGATAGAAAACGAGAAAACATAAGAGATGCAATGGAAGGACAGACAGACCCAGAGCTGACTGACTGTTTGCGAGCTGCTCATGGATGTGCTGGGTTGGGGAAGAAAGAGAGGGGGAGGTTGAGAGACTTGGGGTCAGACGGCAAGAAACAAGGGAGCAGGGGTCACCGAGTGAGTGGAAGAAAGATAAAAAAGAAAGAGAAGGGAAAAACCCAACATTACCGAGCCAACGAAGAGTGGGAAAAGAGTGGGGTGGGTTATGTTGTGGGGTCAAACAATACACAGAGATTGTGGGGGTTAGCAGGAGCACTGGGTCTGATTACACATGATGGTTTTGAATATGCAAGCCTGTGCAGTCAGGACCAGTTCTTCCAGTCGTCCCATAATGAGGGGGAGGACAATGGCGTACATGTCAGTGCTATCATTAAACCACAGACTGGGGGAACTGAGAGCAGGCTAAGCCGTGGCCCCTCGCTGCTAGCAGATGGGTGCCAACCTGTTGAAGGCAACGGGCACGGGGGAGGAGAGCCACAGAGGGGGCTTGTGTCTGCGGAGGGCCCCCTGGGACCCCTTTCCCTCTCCTGGAGGGTCCGGAGGTGTGGTCACCGTCTGTTTTGGGCATGGTTCGTGATGCCCCTCATTGACACTCCTCCTCAACGTCAAGGGGGGTCTGTTTGCAGGGCATCTCCATTCTACATGGAACTGATTCCAGGGCTTGATATAGATGAGAATCGCAAGGCAACTTGTGTTCCTCAGTTCTTGTTCTCTATTAGGAAGGCAGTGGACTTTGTTGGAAAACCAGGGTGTACCAATTTAAGGTGGTCAGAAATGACAACGGTGCTGGAAGCAATTAGCTCTGATGGAATTATGGCAGAAGCAGGCAACTCTCCAAGAGAGACAAGAGGGCAGGCGATACCTCCATTTTGAGCAGAAATGTTTTGAGGTGGAGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU216909 lncRNA upstream 108603 2775608 ~ 2775815 (+) True G190991
TU216800 lncRNA upstream 270941 2612695 ~ 2613477 (+) True G190884
TU216286 lncRNA upstream 332050 2552123 ~ 2552368 (+) True G190408
TU216279 lncRNA upstream 383358 2500774 ~ 2501060 (+) True G190401
TU216269 lncRNA upstream 434142 2449941 ~ 2450276 (+) True G190391
TU216997 lncRNA downstream 199967 3098331 ~ 3098964 (+) True G191058
TU217002 lncRNA downstream 208848 3107212 ~ 3107703 (+) True G191063
TU217003 lncRNA downstream 209347 3107711 ~ 3107958 (+) True G191064
TU217005 lncRNA downstream 210285 3108649 ~ 3108990 (+) True G191066
TU217006 lncRNA downstream 210675 3109039 ~ 3109292 (+) True G191067
CI01000043_02834135_02840882.mRNA mRNA upstream 43405 2832049 ~ 2841013 (+) True CI01000043_02834135_02840882
CI01000043_02787002_02807892.mRNA mRNA upstream 75562 2786832 ~ 2808856 (+) True CI01000043_02787002_02807892
CI01000043_02504537_02519367.mRNA mRNA upstream 363786 2501923 ~ 2520632 (+) True CI01000043_02504537_02519367
CI01000043_02464522_02485377.mRNA mRNA upstream 398108 2464522 ~ 2486310 (+) True CI01000043_02464522_02485377
CI01000043_02375390_02413694.mRNA mRNA upstream 470625 2375390 ~ 2413793 (+) True CI01000043_02375390_02413694
CI01000043_02945803_03044928.mRNA mRNA downstream 47439 2945803 ~ 3044928 (+) True CI01000043_02945803_03044928
CI01000043_03157095_03221503.mRNA mRNA downstream 258353 3156717 ~ 3222623 (+) True CI01000043_03157095_03221503
CI01000043_03270751_03284680.mRNA mRNA downstream 372387 3270751 ~ 3284762 (+) True CI01000043_03270751_03284680
CI01000043_03292361_03301513.mRNA mRNA downstream 393997 3292361 ~ 3301513 (+) True CI01000043_03292361_03301513
CI01000043_03600460_03603309.mRNA mRNA downstream 701911 3600275 ~ 3603404 (+) True CI01000043_03600460_03603309
TU216143 other upstream 440708 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 1191939 1683556 ~ 1692479 (+) True G190241
TU217666 other downstream 1004869 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 1409584 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 2094649 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 2215522 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 2271241 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795

Expression Profile