RNA id: CI01000043_02912881_02924260.mRNA


Basic Information

Item Value
RNA id CI01000043_02912881_02924260.mRNA
length 838
RNA type mRNA
GC content 0.49
exon number 7
gene id CI01000043_02912881_02924260
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 2912876 ~ 2924415 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATGCCTTGAGCACTCTTTTCAACAGGGGCTGACCCCTCACTCGGAGGTTAAGATGACATACAAGCTATTTTCAAAGGCCCTGCGTATCGTCTCAAAGGAAGGACTCACACTCCGCAAGACAGAGTAAAATACTCCATCAAAGAAACTCATGGAATGACACAACAGGCAGTCAAGGTGTCACGGAAATGTGAGTCAGAGAAAAGTGAGGGAACGATGGAAAGGGAACAGGCGGTAGAGTGTGGGCAAGCTCCAACCATCATGTGCTTACAACATGCACTGAGTATGTACTGGTTCACTGAGAGAGTTGGGGATGTATCAGCACGTACACTTTACGGTACACCCTCCGGATCAGGTTTCAGGAAGCTTGTGTTTGTGTGTCACTATGCTAATCTACAAGGGCTAAGACAATGGAAAGATCTGGCTGGGTGCCATGGCTTGAAAATCCCCCTGGCTCTTAGACTTCATGATGGAGCCTTCTTTTTTCAGCAGGGTCATCTAACATCTACGATAAGAGCTCCATGGTCCCCAGCGCACCAGGCTTCAACCCCACCACAGTGGTGTCCCCCTTCAGCCCGGCCCAACCCAGGACCACGGGTCTCTCCTCCGCTTGTGGAAGTATACCAAACATGTCCCAACAGGCCACCAACAGCCCAGCATGGAACACAACGCTCCGCTCAACCCACAAAGAAAGAGAGAGAGAGCGAGAGAATGTTTGTCTCTCTCTACGCCGAAATCATTTTGCTCGGCTTCAAGAGGCACAAGATTACAGGATGGGAAATTATAGTACACAAACATACGCTCGATACATGTGGCCATGATCAAAATACTTGATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217255 lncRNA downstream 28329 2880396 ~ 2884547 (-) True G191299
TU216789 lncRNA downstream 318284 2594314 ~ 2594592 (-) True G190873
TU216785 lncRNA downstream 364576 2548070 ~ 2548300 (-) True G190869
TU216777 lncRNA downstream 385183 2527180 ~ 2527693 (-) True G190861
TU216765 lncRNA downstream 417188 2495474 ~ 2495688 (-) True G190849
TU217460 lncRNA upstream 226416 3150831 ~ 3151071 (-) True G191483
TU217466 lncRNA upstream 243482 3167897 ~ 3168172 (-) True G191489
TU217468 lncRNA upstream 245955 3170370 ~ 3170592 (-) True G191491
TU217483 lncRNA upstream 286322 3210737 ~ 3213930 (-) True G191506
TU217487 lncRNA upstream 291734 3216149 ~ 3216495 (-) True G191510
CI01000043_02868129_02876445.mRNA mRNA downstream 36411 2867416 ~ 2876465 (-) True CI01000043_02868129_02876445
CI01000043_02725571_02730393.mRNA mRNA downstream 182016 2725152 ~ 2730860 (-) True CI01000043_02725571_02730393
CI01000043_02555479_02574821.mRNA mRNA downstream 338055 2555274 ~ 2574821 (-) True CI01000043_02555479_02574821
CI01000043_02443106_02445250.mRNA mRNA downstream 466569 2442964 ~ 2446307 (-) True CI01000043_02443106_02445250
CI01000043_02302020_02310202.mRNA mRNA downstream 602674 2301573 ~ 2310202 (-) True CI01000043_02302020_02310202
CI01000043_03133480_03136057.mRNA mRNA upstream 209014 3133429 ~ 3136325 (-) True CI01000043_03133480_03136057
CI01000043_03138222_03139281.mRNA mRNA upstream 212751 3137166 ~ 3139633 (-) True CI01000043_03138222_03139281
CI01000043_03325623_03351622.mRNA mRNA upstream 400973 3325388 ~ 3353062 (-) True CI01000043_03325623_03351622
CI01000043_03356337_03361772.mRNA mRNA upstream 431636 3356051 ~ 3363143 (-) True CI01000043_03356337_03361772
CI01000043_03377513_03382227.mRNA mRNA upstream 452490 3376905 ~ 3382425 (-) True CI01000043_03377513_03382227
TU216373 other downstream 663396 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 2029708 825737 ~ 883168 (-) False G189881
TU215686 other downstream 2029708 871379 ~ 883168 (-) True G189881
TU215690 other downstream 2037662 814747 ~ 875214 (-) False G189881
TU217252 other upstream 123957 3048372 ~ 3049864 (-) True G191296
TU218131 other upstream 1407496 4331911 ~ 4332726 (-) True G192109
TU219083 other upstream 2532082 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 2669266 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 3331157 6255572 ~ 6256279 (-) True G193313

Expression Profile