RNA id: CI01000043_04292518_04294909.mRNA


Basic Information

Item Value
RNA id CI01000043_04292518_04294909.mRNA
length 914
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000043_04292518_04294909
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4292183 ~ 4294909 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGATACGCGCGGGTTTAGGGCGATGTTACTAACGATATCCGATAAACTTACTGAGGATAATGTGGTGAGTTTAAAGTTTTTGTGCTTAGACATCGGGAAGAAAAGGCTTGAGAAAATCAACAAGGGTTTTGATCTTTTCGAGTGCTTGATCGAAAGAGCTCAAATAGGGCCTGATAACACGGACCTTTTGCGAAAACTTCTGAACGACATCGGTCAGACAGTTCTTCTTGAAATAGTAGAGGATTATGAGAGACAAGCGGCTAGACCCGCTGATGGACTGGATGCGAAAGAGAGAGAAAAAATAAACATTGCAACTGATGTAATTGTTGAACATCTGGGTAAAAAGTGGCTTCAAGTTGGAAGAAAACTTGGACTTCAAGACACTCAGCTGGAAGCCATCCAAGAGAAACACAGCCGTGACCTGGAGGAGCAGGTGAGGGAGCTCATCAGACAGTGGATGAAGATCAAGAAAGTAAACGCCAGAGTGGAGGACCTCATCAAAGCTCTGCGAGACTGCAAACAAAACCTCACCGCTGATCTTGTGGAGAAAAAACTCAGAGAGCGCGGTATACCTTGAACATCACCACACCTCCTCCATTTTTGTCTGTTTTTGGAAACTGTTGTACTACAAAAGGAAAGAGCTTTGGGATTAATAATGTGAATTTCCTTTTAAAGTGCAAATGAACTGAATTGTCTATGGTTGATTGTTTACAGATCTTGAATTAATTTTTGGTGAACATTTGTTAATTGAAAACCATTAGATAATATATTTCGAAATGATTATATTCCAGAAAATGAAATATATTGATTGGTAATTTTGCAGTTTTTACAGAACATAGTCATCATGCAACACTGTTCTTGTATTTACTGATTTTGTGAAAAGAATCTAGTCATGTGACACAAATGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217960 lncRNA downstream 322841 3966947 ~ 3969342 (-) True G191941
TU217959 lncRNA downstream 324939 3966947 ~ 3967244 (-) False G191941
TU217954 lncRNA downstream 333224 3958727 ~ 3958959 (-) True G191938
TU217953 lncRNA downstream 333620 3958336 ~ 3958563 (-) True G191937
TU217948 lncRNA downstream 348185 3943779 ~ 3943998 (-) True G191932
TU218140 lncRNA upstream 57975 4352884 ~ 4353110 (-) True G192118
TU218148 lncRNA upstream 86623 4381532 ~ 4381735 (-) True G192126
TU218160 lncRNA upstream 105037 4399946 ~ 4400234 (-) True G192138
TU218185 lncRNA upstream 130557 4425466 ~ 4425793 (-) True G192163
TU218276 lncRNA upstream 244785 4539694 ~ 4540445 (-) True G192243
CI01000043_04185319_04204509.mRNA mRNA downstream 87142 4185108 ~ 4205041 (-) True CI01000043_04185319_04204509
CI01000043_04168896_04172758.mRNA mRNA downstream 119425 4168871 ~ 4172758 (-) True CI01000043_04168896_04172758
CI01000043_03912564_03929022.mRNA mRNA downstream 363161 3911926 ~ 3929022 (-) True CI01000043_03912564_03929022
CI01000043_03782397_03783190.mRNA mRNA downstream 508058 3781312 ~ 3784125 (-) True CI01000043_03782397_03783190
CI01000043_03750004_03772251.mRNA mRNA downstream 519677 3749842 ~ 3772506 (-) True CI01000043_03750004_03772251
CI01000043_04297368_04337304.mRNA mRNA upstream 1915 4296824 ~ 4337304 (-) True CI01000043_04297368_04337304
CI01000043_04486893_04491014.mRNA mRNA upstream 191692 4486601 ~ 4491988 (-) True CI01000043_04486893_04491014
CI01000043_04701996_04719324.mRNA mRNA upstream 407087 4701996 ~ 4719324 (-) True CI01000043_04701996_04719324
CI01000043_04725324_04728884.mRNA mRNA upstream 430160 4725069 ~ 4728884 (-) True CI01000043_04725324_04728884
CI01000043_04738890_04742485.mRNA mRNA upstream 443981 4738890 ~ 4743454 (-) True CI01000043_04738890_04742485
TU217252 other downstream 1242319 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 2042703 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 3409015 825737 ~ 883168 (-) False G189881
TU215686 other downstream 3409015 871379 ~ 883168 (-) True G189881
TU215693 other downstream 3417918 814747 ~ 874265 (-) False G189881
TU218131 other upstream 37002 4331911 ~ 4332726 (-) True G192109
TU219083 other upstream 1161588 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 1298772 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 1960663 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 2268431 6563340 ~ 6566039 (-) True G193922

Expression Profile