RNA id: CI01000043_04813811_04816237.mRNA



Basic Information


Item Value
RNA id CI01000043_04813811_04816237.mRNA
length 1446
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000043_04813811_04816237
representative True

Chromosome Information


Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4813363 ~ 4816743 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTAAAGACCCTTGGAGGAATAAAGTTTCCACAACATCCTAATAGCCACCTTTGTGCTCAGCCATCGTGTCACTGTTTCTTTAACGCATTGTGTAGCCTACCTTCAGAGGTGCCAATCAGTCTTTTGACTGGCCAGAGATTAAGCTGATGAAGCATTTAGTGCCTTCTAGGGTTACGTGTGTGTGGTCATAAGTGTGTCAGGTTAGAAAAACAGGCATGTCCTTGGAGGGTTAATTTAAGAGAAAACGCCTCAGAGCTGCAGGTGTTCATCGTGTGTTAGGAAATTAGTTTATACTCTCGACATTCAGGCGAAGTAGACCCATGGCTCGCATTAGACGTGTGCAATTAAAAGGTGTGTTAAGTTGTTTTGGTCTGTGTTGTTTACAAGTTTAGCAGAGGAAAACTTGAAATTGTTTGTAAAGGAAACCATATAAATCCTAAGAAAGAATGTGCTTGCTGGGCCTTGTTAGAGTCGTGGATTTTATGGAGAGATCTTATAGTGTGCGATCGCTGCCCACCCTAATTCTTCCACAAATAAACACTCCGAACCACATGCTTTCTGCTAAAAACACTGACCTCATTCCCCAGCAGGGACAAAGACAACTGAATAGAGTGGGGGATGCTGTCAAAATTGAAACAAGCTATGTTAGCGACAGCGTCAGACCCACCTGTTTTCTTCAAGACGATCTGTTAGGAAATAGCAGCGACTATAAATATCCCGCCCTGTCTCCCATGGCCCATATGGCCCTGCTCTTTCCTGAGGGAGAGGAAGTGCTAGCTGATTCAGGGACCCAATCTTTCTCCTGGGAGAGAGGAGAGCCCAGCGATGGGGGTTGGGAAGGACAAGGCTTGTTTACAGTGGAGATCCCTGGAGGTCTGCACTGTACAGTTCAGTGTGGACAAAACACGGACAACCATGAAAGGCAACCACAACAATGAACCTTAACAACTGAAACAATGCTTTTTCATGCATACTCAAAAGTATTGGCTAATTATATAAAAAGTTTAAAATCAACATGACATTGTGTTTGCAGCCCATTTTACTTGTGAAATTTGATGCAATGTTGAATTGTGCACAAGACCAAGAATGTGTGTAAAGTAAAAATCTTTTTGATAAGTAACTGTGGAATTTCAACAGAAAACGGAGACTTAATTCTTTAACATCTTTTATTCTTTTATTATTGTTTACATGTCCAGCATGGATCGTTAAACACACTCAGAAGATGTGAACAAACACAAATGTATAAAATCCTCAGTTTCTACATAAGAAAAAATCAAAAACACAAATCGGAATGTTATTAACAAGGTAGAAATCTAAAAAAAACACAAAAGAAAAATATTGAAAAGGTACTATTTACAATTTTAAAAATGACCAAATTTAAGATAATATTAAGAAAAATATTAACTGAAAACATGACCATCTAAATTTCACTTTACCATTATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU218397 lncRNA upstream 48709 4764183 ~ 4764654 (+) True G192356
TU218360 lncRNA upstream 118979 4694066 ~ 4694384 (+) True G192327
TU218356 lncRNA upstream 124284 4688831 ~ 4689079 (+) True G192323
TU218355 lncRNA upstream 126236 4686847 ~ 4687127 (+) True G192322
TU218354 lncRNA upstream 126548 4686606 ~ 4686815 (+) True G192321
TU218459 lncRNA downstream 63456 4880199 ~ 4880508 (+) True G192416
TU218498 lncRNA downstream 178166 4994909 ~ 4995144 (+) True G192455
TU218504 lncRNA downstream 190683 5007426 ~ 5007733 (+) True G192461
TU218415 lncRNA downstream 230450 5047193 ~ 5050199 (+) True G192373
TU218509 lncRNA downstream 237452 5054195 ~ 5054424 (+) True G192466
CI01000043_04746456_04753978.mRNA mRNA upstream 58999 4746022 ~ 4754364 (+) True CI01000043_04746456_04753978
CI01000043_04471833_04474152.mRNA mRNA upstream 338845 4471629 ~ 4474518 (+) True CI01000043_04471833_04474152
CI01000043_04465956_04468671.mRNA mRNA upstream 343187 4465848 ~ 4470176 (+) True CI01000043_04465956_04468671
CI01000043_04450220_04453014.mRNA mRNA upstream 359498 4449928 ~ 4453865 (+) True CI01000043_04450220_04453014
CI01000043_04440501_04442850.mRNA mRNA upstream 369698 4440357 ~ 4443665 (+) True CI01000043_04440501_04442850
CI01000043_04818939_04819238.mRNA mRNA downstream 2196 4818939 ~ 4820669 (+) True CI01000043_04818939_04819238
CI01000043_04873413_04879547.mRNA mRNA downstream 56670 4873413 ~ 4879602 (+) True CI01000043_04873413_04879547
CI01000043_04887448_04901355.mRNA mRNA downstream 70705 4887448 ~ 4901687 (+) True CI01000043_04887448_04901355
CI01000043_04902104_04912376.mRNA mRNA downstream 85361 4902104 ~ 4912376 (+) True CI01000043_04902104_04912376
CI01000043_05025912_05042461.mRNA mRNA downstream 209169 5025912 ~ 5042676 (+) True CI01000043_05025912_05042461
TU217639 other upstream 462749 4307948 ~ 4350614 (+) True G191644
TU217666 other upstream 903397 3903233 ~ 3909966 (+) True G191670
TU216143 other upstream 2369653 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 3120884 1683556 ~ 1692479 (+) True G190241
TU218497 other downstream 176270 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 297143 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 352862 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795
TU218580 other downstream 352862 5169605 ~ 5171730 (+) True CI01000043_05169578_05171795
TU218539 other downstream 650574 5467317 ~ 5552624 (+) True G192489

Expression Profile