RNA id: CI01000043_04887448_04901355.mRNA



Basic Information


Item Value
RNA id CI01000043_04887448_04901355.mRNA
length 2063
RNA type mRNA
GC content 0.39
exon number 11
gene id CI01000043_04887448_04901355
representative True

Chromosome Information


Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 4887448 ~ 4901687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGACACTCCTTCTACTTCTGATCATGATCTATGGCCTGGATGGTGGAGAATGTGGAGGTTGTGAAGGCAGTGGAATTCTAAGACTAACAAGTACCACAAAGGGATTTGATATTGAAATCTCATTGGAATCTGGACCCTTCATTACTGTTAATGACACTGCAGAACAATTAAGCTGTAATTCAAAAACAAATTCATGTTATATTGAGTGCTCCTATGAAGATTTTTTTGTGAACAAAGCCTCCAACGAAATAAAAGAATTACAACTGTGTGTGCAAAAGCAAAACACAAATAAAACTGCATTCGAATTCAGCATAGTAAACTATACATCACTATGTATTGTGGTGTATTGCTTGCCTGATGAAATAAAAGGCCTCTTGGAGACAAAAGAGAATCAAATGAATAGCCCAAAAGGTCTGAGAAGCATTCTCAATATTAAAAAAATGTGCCAAGAAGTGATCCTTAATGAAGCTGTTGTGGATACCTACATTAGAGTGGAGAAGTCAGCCATAGAGAGTGTTATAAATATGACTGAGCAATCCAAGAATTACACTCATGAAGATCTTTCCATGATTGTGGTTATGATGAATTTAAGCACGGCAGACGATTATGTACCAATATCCGCTCCAAGAGTATTAGGTGTTAATGAAGTTGCAGAGACATTGATCCCGGTGAAGTCTTTCCAAAACGGAAGCAAAATTGGTGTAGTTACCTACGATTCCGATCAGCATTTTAAGCTTAAACTGGGAAGTAAAATTGTTACCTCGAAAATCATACGGATTGAAGTCCCCGAACATGACTTTGTGAAATTGACCAATCGACTTAAAATTCAGTTTAAAGTTAATCACAGTTACACAAATCACACATCTAACTACACCCTGTCCTGTCAGTTCTATGATGCAAATGGTACAGTAATGGTTAATTGTTTCAATGAAAAATCATCTGAAATGCTCTTATATTACAACATATGTCATTTGATGAACTCAAGGGCAGAAGTGTCCAACAGCATCCATGTGTCTCTGAGTGGCGCTCTGTTTCTCCTCAACATCAGCTTCATGCTCAGCGAATGGGCTGCCACACTGACAGAGAAAAATTTCTGTGTGTTTATCGCTGTGATGATACACTACAGCCTGCTGAGTTGTTTCACCTGGATGGCTGTTGAAGCCTTGCATCTGTACCTTCTTCTCATCAGAGTGTTCAACATTAACATCAAACACTACATTATCAAGTTGTCCCTGATCGGATGGGGAGTCCCCGCTGTTGTTGTTGGAGGTTTGCTGTCAGTTTATAACATTCATCCTTTTTATGGCTTATACGAGATGACATTATCAGATACTAACAAAACAAACCCAGTTTGCCTGTTCATAGATCCTCTCGTCATGTATGGCGTGAACATTTCCTACTTCACCGTCATATTCTTGTTAAACGTAGGAATCCTAATCACAGTGTCCAGACAGATCTTTAAGCTACGACATGTGGGCAACAAGCCAGGCAAGATTCCAGTTTGGAAGGACACCGGCACAGTGCTGGGCCTCATGTGTCTGCTGGGTACAACTTGGGGTTTGATCTTCTTCAGCATGGGATATACCAACTACCCTATACTCTACCTGTTCTGTATCTTAAACACAATGCAAGGGTTTTGCATCTTTCTGTGGATGTGCGGTACAGCGAGGAAAAACAGAGCACAAGCATCTCAATCCAAGACTAAATCCACTGTGGACGTCTCTAAGTAATGAACTCTCATGCCATTTTCTTACTAAAACCTCTGACATGGTTTTACAAGAAGACATGTTCCAGCCTCAGCCAGTGACCCACATAAATGTAGCCTGGGTTATGTAAAAATGACACTCACCACAACATGCTAACAAGAAATGGCAATCTTGAGAAAGTGTCGTCAGCAGTTGAAGAGAACTTCCTTTGCACTGATAACAGCACTGCATTAAAGAAAATTCAGTTCCCTCTTTGTAACTGTACACATACTAAAATCTTGATCTATGATCTATCATATCTCTTCGTAAAGCTACTTATCGTATCTAACAAAAATAACAAAAGCTGTGATTTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU218459 lncRNA upstream 6940 4880199 ~ 4880508 (+) True G192416
TU218427 lncRNA upstream 59356 4811329 ~ 4828092 (+) True G192385
TU218397 lncRNA upstream 122794 4764183 ~ 4764654 (+) True G192356
TU218360 lncRNA upstream 193064 4694066 ~ 4694384 (+) True G192327
TU218356 lncRNA upstream 198369 4688831 ~ 4689079 (+) True G192323
TU218498 lncRNA downstream 93222 4994909 ~ 4995144 (+) True G192455
TU218504 lncRNA downstream 105739 5007426 ~ 5007733 (+) True G192461
TU218415 lncRNA downstream 145506 5047193 ~ 5050199 (+) True G192373
TU218509 lncRNA downstream 152508 5054195 ~ 5054424 (+) True G192466
TU218512 lncRNA downstream 154672 5056359 ~ 5056568 (+) True G192469
CI01000043_04873413_04879547.mRNA mRNA upstream 7846 4873413 ~ 4879602 (+) True CI01000043_04873413_04879547
CI01000043_04818939_04819238.mRNA mRNA upstream 66779 4818939 ~ 4820669 (+) True CI01000043_04818939_04819238
CI01000043_04813811_04816237.mRNA mRNA upstream 70705 4813363 ~ 4816743 (+) True CI01000043_04813811_04816237
CI01000043_04746456_04753978.mRNA mRNA upstream 133084 4746022 ~ 4754364 (+) True CI01000043_04746456_04753978
CI01000043_04471833_04474152.mRNA mRNA upstream 412930 4471629 ~ 4474518 (+) True CI01000043_04471833_04474152
CI01000043_04902104_04912376.mRNA mRNA downstream 417 4902104 ~ 4912376 (+) True CI01000043_04902104_04912376
CI01000043_05025912_05042461.mRNA mRNA downstream 124225 5025912 ~ 5042676 (+) True CI01000043_05025912_05042461
CI01000043_05088157_05094871.mRNA mRNA downstream 186470 5088157 ~ 5095162 (+) True CI01000043_05088157_05094871
CI01000043_05099471_05111989.mRNA mRNA downstream 194038 5095725 ~ 5112379 (+) False CI01000043_05099471_05111989
CI01000043_05114193_05114497.mRNA mRNA downstream 212506 5114193 ~ 5114497 (+) False CI01000043_05114193_05114497
TU217639 other upstream 536834 4307948 ~ 4350614 (+) True G191644
TU217666 other upstream 977482 3903233 ~ 3909966 (+) True G191670
TU216143 other upstream 2443738 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 3194969 1683556 ~ 1692479 (+) True G190241
TU218497 other downstream 91326 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 212199 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 267918 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795
TU218580 other downstream 267918 5169605 ~ 5171730 (+) True CI01000043_05169578_05171795
TU218539 other downstream 565630 5467317 ~ 5552624 (+) True G192489

Expression Profile