RNA id: TU218579


Basic Information

Item Value
RNA id TU218579
length 524
RNA type TUCP
GC content 0.54
exon number 3
gene id CI01000043_05169578_05171795
representative False

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 5169578 ~ 5171848 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCACAATCTCGGCTTCTGCTTTTGGTGATCTGCTTCAGCGTTCTCCACTACGGATATAGCCATCCGTCTCGCACTAAGAAAGCAGTTCCGGCTCAACAGAGAGCTACAGAAGATGACGACATGAGGACACAGATTGACAAGCTGTGGCAGGAAATCAACTCTCTGAAAGAGATGCAGGCACTGCAAACAGTTTGCCTGCGTGGCATCAAGGCCCACAGGAAGTGTTACCTGGTTTCTGAGCAGGCCAAGCACTACCATGAGGCCAACGAGGACTGCATCGCGCAGGGAGGGACCCTGGCCATTCCTCGAGACATGAACCAAAACGACGAACTCAGAGACTATGCCAAGCGCAGCTCGCCTGGATCCAAAGATTTCTGGATTGGCATAACAGACATAGTGAAAGAAGGCCAATATGTGGACGTGAACAGCCTGCCCGTCACCTTCTTCCACTGGGATCGATCCAAGAGAGAGCCCACCGGGGGGAAGAGAGAGAGCTGTGTTACGCTCTCGCTGGCAGCACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218554 lncRNA upstream 8702 5160676 ~ 5160903 (+) True G192499
TU218550 lncRNA upstream 9161 5160067 ~ 5160444 (+) True G192495
TU218569 lncRNA upstream 69208 5100187 ~ 5100397 (+) True CI01000043_05099471_05111989
TU218522 lncRNA upstream 91007 5075742 ~ 5078598 (+) True G192479
TU218521 lncRNA upstream 98508 5070878 ~ 5071097 (+) True G192478
TU218586 lncRNA downstream 59205 5230935 ~ 5231163 (+) True G192529
TU218546 lncRNA downstream 275496 5447226 ~ 5450159 (+) True G192493
TU218639 lncRNA downstream 395445 5567175 ~ 5567801 (+) True G192581
TU218649 lncRNA downstream 421937 5593667 ~ 5594645 (+) False G192590
TU218651 lncRNA downstream 421937 5593667 ~ 5698259 (+) False G192590
CI01000043_05119129_05131257.mRNA mRNA upstream 38348 5119129 ~ 5131257 (+) True CI01000043_05119129_05131257
CI01000043_05114193_05114497.mRNA mRNA upstream 55108 5114193 ~ 5114497 (+) False CI01000043_05114193_05114497
CI01000043_05099471_05111989.mRNA mRNA upstream 57226 5095725 ~ 5112379 (+) False CI01000043_05099471_05111989
CI01000043_05088157_05094871.mRNA mRNA upstream 74443 5088157 ~ 5095162 (+) True CI01000043_05088157_05094871
CI01000043_05025912_05042461.mRNA mRNA upstream 126929 5025912 ~ 5042676 (+) True CI01000043_05025912_05042461
CI01000043_05185874_05196576.mRNA mRNA downstream 14144 5185874 ~ 5196597 (+) True CI01000043_05185874_05196576
CI01000043_05261569_05299427.mRNA mRNA downstream 89839 5261569 ~ 5299427 (+) True CI01000043_05261569_05299427
CI01000043_05334800_05345427.mRNA mRNA downstream 163070 5334800 ~ 5345747 (+) True CI01000043_05334800_05345427
CI01000043_05368751_05369299.mRNA mRNA downstream 196615 5368345 ~ 5369636 (+) True CI01000043_05368751_05369299
CI01000043_05388826_05406208.mRNA mRNA downstream 215922 5387652 ~ 5406884 (+) True CI01000043_05388826_05406208
TU218527 other upstream 51157 5113886 ~ 5118448 (+) True G192484
TU218497 other upstream 176249 4993013 ~ 4993356 (+) True G192454
TU217639 other upstream 818991 4307948 ~ 4350614 (+) True G191644
TU217666 other upstream 1259639 3903233 ~ 3909966 (+) True G191670
TU216143 other upstream 2725895 2441862 ~ 2443710 (+) True G190272
TU218539 other downstream 295587 5467317 ~ 5552624 (+) True G192489
TU219250 other downstream 1033958 6205688 ~ 6210893 (+) True G193125
TU219499 other downstream 1138422 6310152 ~ 6310538 (+) True G193344
TU219592 other downstream 1472411 6644141 ~ 6648342 (+) True G193422
TU219777 other downstream 1760246 6931976 ~ 6934847 (+) True G193584

Expression Profile