RNA id: CI01000043_06225443_06244661.mRNA


Basic Information

Item Value
RNA id CI01000043_06225443_06244661.mRNA
length 3099
RNA type mRNA
GC content 0.43
exon number 18
gene id CI01000043_06225443_06244661
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 6224972 ~ 6244661 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCAGTCTCAAAGCAAGTGCTTGCTTATTGCTGGATTTCAGTTGTTTTGATGCCACTTACAACTTGTAAGGACCAATCAGAAGAAAATGGACATCAGAAATATGATTATGGAAGGGAAATTAATGAGGGAATAGTGTACGAGTTTGTTCAGGAGTCCATGCCATGGGATGAAGCCCAAAAGAGTTGTGAAAAACAAGGTGGACATCTTCTGAGGGACATGAATGATGAGATTAAGGAGCTCTTACAAAGCCAGTCCAAAGAAACCGGACCGTGGTGGGTCAGTCAGGATTTGATGTATACGAATTCCTATAGGGGATTTGAGCCAATAAACCCTGTATCAAATGATGCCAGTGATGTGAATAAAGATGACTTTGCTTGCACCTATATGGTGATGGATCCATTTCAGCTGGTGACCACACCCAACTGCTCTATGAGCTTTGGCTCCCTCTGCACACGAGATTCAAACACACATCTGAAAAGGAGCCGCAGAGGTCTTGCTGACACATTAACGTTAATGCAAGGCAATTTAGGTACTACTCAGCTATTGCAGGTCAAATACCTGCAAAGCATATATGATCACCTACAAAAAAACACTGTAACAGATACAGTCGAGCTTGCTGAAATTGTCAACAGCACTGCAGCCATGCTTCTGTACTCGCAAGAGTGTGAACCTGACAACATGGATGATTTTGAGGATCTTATTGCTCTTGCTGGAAACATTTACGTGAAGGCTCTAGCTGGTAACGGGAACATTGTCAAGGAACTTCCAACAGGCACCATTTATGTCACCAGGCAAGAATCAAACACTCTGGGTGGAAAGTCCATTGGCTCAAAGGATGGAGGATATTGCCAACTTCCATCTCTTTCTGCAATGACAGGCCAACTGCCCTCTGGGAGTGTCGATGTCCAGCTCTTCCAATTTAAAGAGAATCCAATAGAAGCAAAGTCCAACGAAAGCATCACTGGATCAACTTGCAGCTTTTCTGTGCAGAAGGGAAACACTTCAGTCAAATTCACGAATCTTCCAGAGAACATTGAGATATATCTGCCTCGGCCTGAAGCGTCTGAGCCCAAAGTTGTGGATATAACCTGGAAAAAAGGGTTCGCTGTCACCTCAACGTTCAACATCTCAGATGTAAACTTGACCGTAGTTGTTACAGCCATACCAAATCGAAACGTAACTCTCAGTTTTAACTTGTACCTACCATATGAGGCAAACACCACCTCTTTGAATCAAAGCACTATTGTGACTTACAAAGATGGTTATCGCTGGCTGATCACCCCTGATATGATAAAGCAAGTCGATGGGACTTGGAAGGTGGTAGTGTTCCCAAATAATTACACCTCAAGTGAGACGCTGACCTTTAAAGTTTCAGTTTTTGTAACAAAGTGCCTGTTTTGGGACACAGATCTTGGAGACTGGAGTAGAGAGGGCTGCATGGTTGGTCCCAATACAATGCCGAACCTAACTCACTGCTTGTGCAACCACACGACGTTCTTTGGGAGCTCCTTCTTTGTGATGCCCAACCAAGTTGATCTGTCCCAGACAGCAGCTTTGTTTTCCACAGTAAATGAGAACTATATAGTGGTGGTTTTACTCAGCTGCTTCTTTGCCCTCTACCTTGTGGTTGTAATGTGGGCCTGGTATGCCGACCGCAAAGCTCTGAGAACGCGTAAGATGACTCTTTTAGAGGACAATCATCCATGTGCCCAATACAACTACCTTTTTAATGTGCAGACAGGCCACAGAAGAGGGGCTGGCACCACTGCAAAGGTAATGGTGACCCTCCAATTCACAGAAGGGCAGAGTGAATCTTACAATTTGTCTGACCCTGAGAAGCCAGTGTTTGAGAGGGGAGGTATGGATGTGTTTCTGCTCAGTATGCCCTTCTCTCTCGGAGAACTGCAGAGCATTGAGATATCGCATGACAACTCTGGGAGAAGCCCTGACTGGTACTTGGACAAAGTGCAGGAAACCATAGGACTTTTGAATCATCTCAGCAAAAGCCCCAAAAACATGCTGTCTGCCAAAGAGATACGGCCTGAGACAAGTGGTGATCTTTTCTGGGCCCTGAATAAAGTGAATGACGTCCTTCAGATTATGCAAGTGGAAATTGTTGGTGACCCTCACTGGTCGTACTGCAGCCGCTTCGTGTTCTATTCACTGAGCCACATTTCTCGCCTACTGGAGCATGTGGGAGAAAAGGGTTATTTTCTTAATGAAGAGCTTCGGGAGGCACGGGGGACAGTCGGTGTTCTGCTGAAGAAGGCTGAAATGGCGTCTCTTCAGCATACTTCCCAAAGTACGCCAATTGTGCAAGTACAGAAGAAGAAACAGGGTTGGTGGTTGCCTTGGTGGTTTCTTTTTATTGGCTGGATCCTGCTTTTTGCCATGAGTGGTCTTTCCACCTTCTTTACCCTGTTTTATGGCTTCCAGTACGGAAGGGAGTCGTCCATACAGTGGGTGATCACTCTTACATTATCGCTTGTACAAAGCATCTTCATCTTGCAGCCCCTTAAGGTGATATTTGTGGCAATCTTCTTTGCCATGATCCTGAGGCCAGTAGCTGTGGAGAACAATGAGGAGGTTGAACTGCTCCTGCAGGTTTATAATCCATTTGTGTAGGCAGACTTTATTTTTCATGTTAGTATTTTAGTAAGATACCTATATGTACAGAACTTTGTGTCAAAAATGTTATTTAGTCTATACTGTTACAATAACAATGGTCTATAGTTCAACACACTTATCATGTTTTATTTTTGCTCAAATCAAAAAACAAAAGTGGGTTTTCTAATAGACCATAGCAATAATGTCATTTGAAAAATAACAAATCTGTCAACAAAAAATATATATATGAATAGATTTACGTGTTGGTGGTCAGTATCATTCTAGACATTGCAATTTTTCTTTAAATTACTAGAGGAGCAGATTCTCATAACACTCACTTTTTGTTTCTGATGTAATTGTTGACATTTGCTTAGTGTCGATTTTGAAACTATATTACATTCTAAAAAAAAACACTGAACATCCACTATTATGTCTCAGTTAACTCCATAAATACTCCGCAAAAATGTATTTTAGTATACCTTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219345 lncRNA downstream 76380 6146791 ~ 6148592 (-) True G193207
TU219275 lncRNA downstream 237072 5984413 ~ 5987900 (-) True G193143
TU219315 lncRNA downstream 349419 5875318 ~ 5875553 (-) True G193183
TU219304 lncRNA downstream 374238 5850479 ~ 5850734 (-) True G193172
TU219303 lncRNA downstream 375277 5849435 ~ 5849695 (-) True G193171
TU220027 lncRNA upstream 23602 6268263 ~ 6268591 (-) True G193790
TU220036 lncRNA upstream 34306 6278967 ~ 6279240 (-) True G193799
TU220041 lncRNA upstream 42812 6287473 ~ 6287713 (-) True G193804
TU220042 lncRNA upstream 46627 6291288 ~ 6294781 (-) False G193805
TU220044 lncRNA upstream 46627 6291288 ~ 6294781 (-) False G193805
CI01000043_06218733_06222025.mRNA mRNA downstream 2204 6218733 ~ 6222768 (-) True CI01000043_06218733_06222025
CI01000043_06204424_06208220.mRNA mRNA downstream 16752 6204403 ~ 6208220 (-) True CI01000043_06204424_06208220
CI01000043_06044256_06044543.mRNA mRNA downstream 179587 6043759 ~ 6045385 (-) True CI01000043_06044256_06044543
CI01000043_06014651_06016474.mRNA mRNA downstream 207954 6014410 ~ 6017018 (-) True CI01000043_06014651_06016474
CI01000043_05992881_06008325.mRNA mRNA downstream 216621 5992798 ~ 6008351 (-) True CI01000043_05992881_06008325
CI01000043_06269503_06272443.mRNA mRNA upstream 24719 6269380 ~ 6272443 (-) True CI01000043_06269503_06272443
CI01000043_06302312_06306588.mRNA mRNA upstream 57429 6302090 ~ 6306631 (-) True CI01000043_06302312_06306588
CI01000043_06393054_06405683.mRNA mRNA upstream 148063 6392724 ~ 6405683 (-) True CI01000043_06393054_06405683
CI01000043_06408340_06410360.mRNA mRNA upstream 163424 6408085 ~ 6412619 (-) True CI01000043_06408340_06410360
CI01000043_06418312_06429795.mRNA mRNA upstream 173429 6418090 ~ 6430039 (-) True CI01000043_06418312_06429795
TU219049 other downstream 606532 5593681 ~ 5618440 (-) True G192947
TU219083 other downstream 766558 5456497 ~ 5458414 (-) True G192980
TU218131 other downstream 1892246 4331911 ~ 4332726 (-) True G192109
TU217252 other downstream 3175108 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 3975492 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU219459 other upstream 10911 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 318679 6563340 ~ 6566039 (-) True G193922
TU220402 other upstream 1186225 7478375 ~ 7478742 (-) True CI01000043_07464177_07486461

Expression Profile