RNA id: TU214958


Basic Information

Item Value
RNA id TU214958
length 1484
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G189245
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 234129 ~ 235612 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAGACTGAAATTTCTGGACATTTCAAAAACAGAAAAAAAGAGCACTCTGTTAAATAACTGGCACCAACCCTACAAACAAATGAAGTGGTTATATAATTTAAATGAATAAAATTAATGCATGTTTGTTCAAAAGACTCTGTATACATTAACCATTTTGACTCCATTGTGAAAATCTGATTTCTTTTCTGAAAAGGAGGAGCGGAGGGAGGAAATCTAAACAGCAATCATCTCTGGTTGCCTCGTCAGCCAACAATTAGAGCTGCCAAGACCAATAAACTACTATGTGGCCTAAATGCGCCATGTGTTTTAGCAGCAAAAACATAGTCCTGAACCTCGGAGAACCAACTCCAAGGGGGTTTTGAGAACTCAAACACATATGGGTTTATAACAATCCTCAAATAATCTTTATATAAAACAAACATGTACATAACAAATTTGAAAGCATCATACACATTTCCAAATATATAGGGTGAATATCCCAAAACCATTTCAAAGTAAAAATTAAACCATATATATATATATATATATATATATATATATATATAGTCTATTTTAGATTATACCATGGTCTGTCTGTATACTCAATTCAGATTGGCTGGAAGGTGTGCATTAAAACCAGTAGTTCCAGTCAGTTTAATCACCGTTCTATATTAATGCACTGTTTTCACTGAAGAGCACACACACATCACTCACACACCGAGATCGAAGCACAGAAATGTATCAATGCTGCCTGTTACTTTTATTAATGAAATAGCTTCAGTACTGAATTGCTACATTATATTTCTCAGCAAAGAGGGGGTTACGTCGCTGTTTTTGAAGGAATTAAACTCACAGCTGCAGGTAATTCACATACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGATAATTAAAGCAAATAAATGCTATAGCTCATTCACTACTTTATCTCTGTGTCTGATTTAAAGCAGACAGAATGCTAGATCTATCTAGAGCCGTAACTGATGAAAATAACCGTCATTTCTACCCTTCCAATCAAATATTGTGCTGCAAACACCAATAATAGCTTTAACTTGTCAATGCCAGCAAATGACCATGGTATAAGCGTGATAATCCATGGCTAGCTGTGCGTAAAACAATTTGAATGCACTCCGTTTCACGTCGGGTGGTTCTTTGCCTCCACGTTGTGCATTAAAATCGTCACAGCTAGCCTTGGACTATCCCTTATTTTGGGGAAAACATGGCCTGGACATGATCCTGACAGGTTTTGTGACATTCACCCAGTCAGTTGCATTCACTTACACAATTAGCGTAGCCCTATAATTTCATAGATGGCTAAATCATGTGCAAGTGCAAGGTGCTTTACAGATTCTGTTTAGCTGTTTTTTTTGTTTTGGTTGCTATATAAACTCTGAACATATTTTAACATCAAACAAGAAAAGCCATAACCATATATATATACACACACTGCCAGGCCAAAAAAACAAAAAACAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214975 lncRNA upstream 4889 228820 ~ 229240 (+) True G189262
TU214952 lncRNA upstream 18420 210439 ~ 215709 (+) True G189240
TU214941 lncRNA upstream 25134 206979 ~ 208995 (+) False G189236
TU214943 lncRNA upstream 25134 208583 ~ 208995 (+) True G189236
TU214942 lncRNA upstream 25738 206979 ~ 208391 (+) False G189236
TU215012 lncRNA downstream 65192 300804 ~ 347407 (+) True G189296
TU215050 lncRNA downstream 115467 351079 ~ 351447 (+) True G189334
TU215056 lncRNA downstream 178261 413873 ~ 414700 (+) False G189340
TU215058 lncRNA downstream 178261 413873 ~ 414700 (+) True G189340
TU214995 lncRNA downstream 191618 427230 ~ 430719 (+) True G189281
CI01000043_00176126_00193756.mRNA mRNA upstream 39943 176076 ~ 194186 (+) True CI01000043_00176126_00193756
CI01000043_00174845_00175959.mRNA mRNA upstream 58064 172295 ~ 176065 (+) True CI01000043_00174845_00175959
CI01000043_00093397_00132783.mRNA mRNA upstream 100656 92844 ~ 133473 (+) True CI01000043_00093397_00132783
CI01000043_00040385_00051009.mRNA mRNA upstream 183120 40327 ~ 51009 (+) True CI01000043_00040385_00051009
CI01000043_00372873_00405272.mRNA mRNA downstream 137261 372873 ~ 405425 (+) True CI01000043_00372873_00405272
CI01000043_00449493_00494730.mRNA mRNA downstream 213881 449493 ~ 494730 (+) True CI01000043_00449493_00494730
CI01000043_00529899_00530472.mRNA mRNA downstream 294236 529848 ~ 530885 (+) True CI01000043_00529899_00530472
CI01000043_00613106_00620046.mRNA mRNA downstream 377494 613106 ~ 620487 (+) True CI01000043_00613106_00620046
CI01000043_00670862_00685333.mRNA mRNA downstream 433881 669493 ~ 686239 (+) True CI01000043_00670862_00685333
TU216107 other downstream 1447944 1683556 ~ 1692479 (+) True G190241
TU216143 other downstream 2206250 2441862 ~ 2443710 (+) True G190272
TU217666 other downstream 3667621 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 4072336 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 4757401 4993013 ~ 4993356 (+) True G192454

Expression Profile