RNA id: TU215103



Basic Information


Item Value
RNA id TU215103
length 459
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G189384
representative True

Chromosome Information


Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 563845 ~ 595280 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAAAAGAAAAACTGAAATATCACATGTATTCAGACCCTTTGCTGTGACACTCATATATTTAACTCAGGTGCTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATATAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATAAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAATTTCTGCTGCACTTAAGGTTCCTAAGAGCACAGTGGCCTCCATAATCCTTAAATGGAAGACGTTTGGGACGACCAGAACCCTTCCTAGAGCTGGCCGTCCGGCCAAACTGAGCTATCGGGGGAGAAGAGCCTTGGTGAGAGAGGTAAAGAAGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU215005 lncRNA upstream 36264 525720 ~ 527581 (+) True G189289
TU215004 lncRNA upstream 125606 437503 ~ 438239 (+) True G189288
TU214995 lncRNA upstream 133126 427230 ~ 430719 (+) True G189281
TU215056 lncRNA upstream 149145 413873 ~ 414700 (+) False G189340
TU215092 lncRNA downstream 7621 602901 ~ 603278 (+) True G189374
TU215117 lncRNA downstream 11108 606388 ~ 607180 (+) True G189398
TU215123 lncRNA downstream 28171 623451 ~ 624583 (+) True G189404
TU215126 lncRNA downstream 40264 635544 ~ 635752 (+) True G189407
TU215127 lncRNA downstream 42510 637790 ~ 638252 (+) True G189408
CI01000043_00529899_00530472.mRNA mRNA upstream 32960 529848 ~ 530885 (+) True CI01000043_00529899_00530472
CI01000043_00449493_00494730.mRNA mRNA upstream 69115 449493 ~ 494730 (+) True CI01000043_00449493_00494730
CI01000043_00372873_00405272.mRNA mRNA upstream 158420 372873 ~ 405425 (+) True CI01000043_00372873_00405272
CI01000043_00176126_00193756.mRNA mRNA upstream 369659 176076 ~ 194186 (+) True CI01000043_00176126_00193756
CI01000043_00174845_00175959.mRNA mRNA upstream 387780 172295 ~ 176065 (+) True CI01000043_00174845_00175959
CI01000043_00613106_00620046.mRNA mRNA downstream 17826 613106 ~ 620487 (+) True CI01000043_00613106_00620046
CI01000043_00670862_00685333.mRNA mRNA downstream 74213 669493 ~ 686239 (+) True CI01000043_00670862_00685333
CI01000043_00700044_00705027.mRNA mRNA downstream 103857 699137 ~ 705201 (+) True CI01000043_00700044_00705027
CI01000043_00713100_00730032.mRNA mRNA downstream 117820 713100 ~ 732043 (+) True CI01000043_00713100_00730032
CI01000043_00732508_00746912.mRNA mRNA downstream 137228 732508 ~ 748167 (+) True CI01000043_00732508_00746912
TU216107 other downstream 1088276 1683556 ~ 1692479 (+) True G190241
TU216143 other downstream 1846582 2441862 ~ 2443710 (+) True G190272
TU217666 other downstream 3307953 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 3712668 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 4397733 4993013 ~ 4993356 (+) True G192454

Expression Profile