RNA id: TU215140


Basic Information

Item Value
RNA id TU215140
length 379
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G189416
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 687003 ~ 687381 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGATGCATTTGTGTTAGAAAAATATCCATATTTAAAACTTTAAAATAACTAGCTTCCGACAGACGGCCATAAGCATGACGTAATGACAAACGCGGAAGCTCAGAGGTGAGAGCAAAACAAAACACCGGTCACGAATTAGAAGTCTAAAATGAGAATTTTTAAAGAGAAATGTTGGAGGATTTCAATATAAGAGAAGAGGAGCTTGAGTTTGTTGCCTAGCCCTATTCGTTTGAACCGCGAGAGGCGTCAAAGCTTACGTTCCTACATTGCGTCAGGGATTACTCTTTTGGCGTAAGTCGACCTGCGTACAGCCGTCTGCTGGAAGCTAGGTATTTAAGTTTTTAATGTTTTAAATATGGATATTTTTCTTACATAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215151 lncRNA upstream 22322 658279 ~ 664681 (+) True G189425
TU215129 lncRNA upstream 47125 639576 ~ 639878 (+) True G189410
TU215127 lncRNA upstream 48751 637790 ~ 638252 (+) True G189408
TU215126 lncRNA upstream 51251 635544 ~ 635752 (+) True G189407
TU215123 lncRNA upstream 62420 623451 ~ 624583 (+) True G189404
TU215137 lncRNA downstream 92 687473 ~ 689760 (+) True G189413
TU215241 lncRNA downstream 92042 817771 ~ 819503 (+) True CI01000043_00814611_00818100
TU215239 lncRNA downstream 145559 832940 ~ 840609 (+) True G189501
TU215280 lncRNA downstream 162417 849798 ~ 855569 (+) True G189528
TU215282 lncRNA downstream 167106 854487 ~ 854813 (+) True G189530
CI01000043_00670862_00685333.mRNA mRNA upstream 764 669493 ~ 686239 (+) True CI01000043_00670862_00685333
CI01000043_00613106_00620046.mRNA mRNA upstream 66516 613106 ~ 620487 (+) True CI01000043_00613106_00620046
CI01000043_00529899_00530472.mRNA mRNA upstream 156118 529848 ~ 530885 (+) True CI01000043_00529899_00530472
CI01000043_00449493_00494730.mRNA mRNA upstream 192273 449493 ~ 494730 (+) True CI01000043_00449493_00494730
CI01000043_00372873_00405272.mRNA mRNA upstream 281578 372873 ~ 405425 (+) True CI01000043_00372873_00405272
CI01000043_00700044_00705027.mRNA mRNA downstream 11756 699137 ~ 705201 (+) True CI01000043_00700044_00705027
CI01000043_00713100_00730032.mRNA mRNA downstream 25719 713100 ~ 732043 (+) True CI01000043_00713100_00730032
CI01000043_00732508_00746912.mRNA mRNA downstream 45127 732508 ~ 748167 (+) True CI01000043_00732508_00746912
CI01000043_00755986_00763327.mRNA mRNA downstream 68460 755841 ~ 763946 (+) True CI01000043_00755986_00763327
CI01000043_00776707_00791897.mRNA mRNA downstream 88860 776241 ~ 791931 (+) False CI01000043_00776707_00791897
TU216107 other downstream 996175 1683556 ~ 1692479 (+) True G190241
TU216143 other downstream 1754481 2441862 ~ 2443710 (+) True G190272
TU217666 other downstream 3215852 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 3620567 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 4305632 4993013 ~ 4993356 (+) True G192454

Expression Profile