RNA id: TU215282


Basic Information

Item Value
RNA id TU215282
length 274
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G189530
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 854487 ~ 854813 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAATTATATTTCAGATTGAATGCATGTATGCTAGGTGAGAAACTTGACCACATGGGAGATTTGTGGTAAATTTCATCCCAAAATGCCCCCCGATAAAAATTACGTTCTGGGGGGTAAAACATTTTTTTTTTTTTTGGCAGGGTTCCCTGGGTAAAATGTGCATTCCAAGGGCTAAATATCATGTTATTTGGGCTCGCTTCAACCCGTGGACATGAAAAACAACCTGCGGCAACAGTGTAAAAGTAGCCCGCAGACTTGGCAACACTGTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215239 lncRNA upstream 13878 832940 ~ 840609 (+) True G189501
TU215241 lncRNA upstream 34984 817771 ~ 819503 (+) True CI01000043_00814611_00818100
TU215137 lncRNA upstream 164727 687473 ~ 689760 (+) True G189413
TU215140 lncRNA upstream 167106 687003 ~ 687381 (+) True G189416
TU215151 lncRNA upstream 189806 658279 ~ 664681 (+) True G189425
TU215307 lncRNA downstream 63597 918410 ~ 919428 (+) True G189552
TU215309 lncRNA downstream 66034 920847 ~ 921240 (+) False G189554
TU215311 lncRNA downstream 66034 920847 ~ 921656 (+) False G189554
TU215312 lncRNA downstream 66580 921393 ~ 921656 (+) True G189554
TU215313 lncRNA downstream 67503 922316 ~ 922516 (+) True G189555
CI01000043_00825755_00838325.mRNA mRNA upstream 15896 825660 ~ 838591 (+) True CI01000043_00825755_00838325
CI01000043_00814611_00818100.mRNA mRNA upstream 34966 814552 ~ 819521 (+) False CI01000043_00814611_00818100
CI01000043_00776707_00791897.mRNA mRNA upstream 62556 776241 ~ 791931 (+) False CI01000043_00776707_00791897
CI01000043_00755986_00763327.mRNA mRNA upstream 90541 755841 ~ 763946 (+) True CI01000043_00755986_00763327
CI01000043_00732508_00746912.mRNA mRNA upstream 106320 732508 ~ 748167 (+) True CI01000043_00732508_00746912
CI01000043_00872741_00876715.mRNA mRNA downstream 17928 872741 ~ 876985 (+) True CI01000043_00872741_00876715
CI01000043_00878804_00886856.mRNA mRNA downstream 23991 878804 ~ 886970 (+) True CI01000043_00878804_00886856
CI01000043_00898380_00913554.mRNA mRNA downstream 43567 898380 ~ 913647 (+) True CI01000043_00898380_00913554
CI01000043_00930835_00959810.mRNA mRNA downstream 75516 930329 ~ 960211 (+) True CI01000043_00930835_00959810
CI01000043_01366462_01369312.mRNA mRNA downstream 511649 1366462 ~ 1369887 (+) False CI01000043_01366462_01369312
TU216107 other downstream 828743 1683556 ~ 1692479 (+) True G190241
TU216143 other downstream 1587049 2441862 ~ 2443710 (+) True G190272
TU217666 other downstream 3048420 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 3453135 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 4138200 4993013 ~ 4993356 (+) True G192454

Expression Profile