RNA id: TU215309


Basic Information

Item Value
RNA id TU215309
length 394
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G189554
representative False

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 920847 ~ 921656 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATTTCATGCTGACTTTAATGTAGCTGTGATGTGGACTTCCCTATTCTCATTGAATTAGAATGGTCAGTCTTGCACAGTGGGCAAATTTAATTAAAAAAATGCATGTGTACAAGGTTGACCAAGAAGCACATGGGTATCACAAGTTTAGAAACACAGGAAGTGTAATATACAAAAAAGCATGTGTGTTAGAATCTTATTATTTTTAATTGCTTCTATGTGCAGTTTGACATGCTTCATAGTTCACCCAAAAATGAAAATTTTGTCATTACTTACCCTCAAGTTGTTCCAAACCTGTATGAGATTCTTTCTTCTGTTGCACACAAAATAAGATATTTTAAAGAATGTTTGTATCCAGACAGTTGACAGCACCCATTGACTTCCATGGTGGGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215307 lncRNA upstream 1419 918410 ~ 919428 (+) True G189552
TU215280 lncRNA upstream 65278 849798 ~ 855569 (+) True G189528
TU215282 lncRNA upstream 66034 854487 ~ 854813 (+) True G189530
TU215239 lncRNA upstream 80238 832940 ~ 840609 (+) True G189501
TU215241 lncRNA upstream 101344 817771 ~ 819503 (+) True CI01000043_00814611_00818100
TU215312 lncRNA downstream 153 921393 ~ 921656 (+) True G189554
TU215313 lncRNA downstream 1076 922316 ~ 922516 (+) True G189555
TU215199 lncRNA downstream 56776 978016 ~ 978431 (+) True G189461
TU215215 lncRNA downstream 98374 1019614 ~ 1019913 (+) True G189477
TU215225 lncRNA downstream 106001 1027241 ~ 1028134 (+) True G189487
CI01000043_00898380_00913554.mRNA mRNA upstream 7200 898380 ~ 913647 (+) True CI01000043_00898380_00913554
CI01000043_00878804_00886856.mRNA mRNA upstream 33877 878804 ~ 886970 (+) True CI01000043_00878804_00886856
CI01000043_00872741_00876715.mRNA mRNA upstream 43862 872741 ~ 876985 (+) True CI01000043_00872741_00876715
CI01000043_00825755_00838325.mRNA mRNA upstream 82256 825660 ~ 838591 (+) True CI01000043_00825755_00838325
CI01000043_00814611_00818100.mRNA mRNA upstream 101326 814552 ~ 819521 (+) False CI01000043_00814611_00818100
CI01000043_00930835_00959810.mRNA mRNA downstream 9089 930329 ~ 960211 (+) True CI01000043_00930835_00959810
CI01000043_01366462_01369312.mRNA mRNA downstream 445222 1366462 ~ 1369887 (+) False CI01000043_01366462_01369312
CI01000043_01383746_01406582.mRNA mRNA downstream 460939 1382179 ~ 1406593 (+) True CI01000043_01383746_01406582
CI01000043_01423076_01424727.mRNA mRNA downstream 501564 1422804 ~ 1424730 (+) True CI01000043_01423076_01424727
CI01000043_01626021_01650266.mRNA mRNA downstream 704781 1626021 ~ 1651813 (+) True CI01000043_01626021_01650266
TU216107 other downstream 762316 1683556 ~ 1692479 (+) True G190241
TU216143 other downstream 1520622 2441862 ~ 2443710 (+) True G190272
TU217666 other downstream 2981993 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 3386708 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 4071773 4993013 ~ 4993356 (+) True G192454

Expression Profile