RNA id: TU215312


Basic Information

Item Value
RNA id TU215312
length 264
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G189554
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 920847 ~ 921656 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATATTTGCAAGAATAATGTTATCAAAGCCACTGGAAGGCAAGCCTGCAACCTTTAGCCAAAAAAGTGTAACGGCTAATGCTAATGCTCCGGCTCTGGCGGTACTCATAGGCGGTACGCAGGGAAGGAGTTTTGAACGGCGGGCACTGATGTCACTGCCATTGCACAATAGGCTGAGAGGTTCCGCACGTGATTAAGTTAGCCGTTACGCTTTCTCCAACGGTAAGAGATACAGACCCTCTCATCTCCCCTCTCATGTTGATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215309 lncRNA upstream 153 920847 ~ 921240 (+) False G189554
TU215307 lncRNA upstream 1965 918410 ~ 919428 (+) True G189552
TU215280 lncRNA upstream 65824 849798 ~ 855569 (+) True G189528
TU215282 lncRNA upstream 66580 854487 ~ 854813 (+) True G189530
TU215239 lncRNA upstream 80784 832940 ~ 840609 (+) True G189501
TU215313 lncRNA downstream 660 922316 ~ 922516 (+) True G189555
TU215199 lncRNA downstream 56360 978016 ~ 978431 (+) True G189461
TU215215 lncRNA downstream 97958 1019614 ~ 1019913 (+) True G189477
TU215225 lncRNA downstream 105585 1027241 ~ 1028134 (+) True G189487
TU215323 lncRNA downstream 160457 1082113 ~ 1082292 (+) True G189565
CI01000043_00898380_00913554.mRNA mRNA upstream 7746 898380 ~ 913647 (+) True CI01000043_00898380_00913554
CI01000043_00878804_00886856.mRNA mRNA upstream 34423 878804 ~ 886970 (+) True CI01000043_00878804_00886856
CI01000043_00872741_00876715.mRNA mRNA upstream 44408 872741 ~ 876985 (+) True CI01000043_00872741_00876715
CI01000043_00825755_00838325.mRNA mRNA upstream 82802 825660 ~ 838591 (+) True CI01000043_00825755_00838325
CI01000043_00814611_00818100.mRNA mRNA upstream 101872 814552 ~ 819521 (+) False CI01000043_00814611_00818100
CI01000043_00930835_00959810.mRNA mRNA downstream 8673 930329 ~ 960211 (+) True CI01000043_00930835_00959810
CI01000043_01366462_01369312.mRNA mRNA downstream 444806 1366462 ~ 1369887 (+) False CI01000043_01366462_01369312
CI01000043_01383746_01406582.mRNA mRNA downstream 460523 1382179 ~ 1406593 (+) True CI01000043_01383746_01406582
CI01000043_01423076_01424727.mRNA mRNA downstream 501148 1422804 ~ 1424730 (+) True CI01000043_01423076_01424727
CI01000043_01626021_01650266.mRNA mRNA downstream 704365 1626021 ~ 1651813 (+) True CI01000043_01626021_01650266
TU216107 other downstream 761900 1683556 ~ 1692479 (+) True G190241
TU216143 other downstream 1520206 2441862 ~ 2443710 (+) True G190272
TU217666 other downstream 2981577 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 3386292 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 4071357 4993013 ~ 4993356 (+) True G192454

Expression Profile