RNA id: TU216052


Basic Information

Item Value
RNA id TU216052
length 340
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G190206
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 1531712 ~ 1532051 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTCATCATCATTTGAAGTACTTTTGGTACCACTTTTGACATTTTCGCAAAAAATAAATTATTGTGATTACGCTTGTTTGTCTGTCATTCTTTTATTTGTAACAGTAGGTAGTTTAAAGAAATGGTTATGGGTAGGTTTAGGGGTAAGTGTAGGATTAGTGGCTCAAAATATCGTTTTAATGTTATATTTTTAGGCTACTAAAATTGTCATTTTCCTACACATTTCTGTTCTTTCTGTTTTATTCTTTTAACATTCTGTATAAAATGGGTAGGTTTAGGTTTGGGATGGGGTTTAGGGATCTTACATTTATCTACAAAACGATAAAATGGAAATTATAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215183 lncRNA upstream 116083 1414956 ~ 1415629 (+) True G189445
TU215179 lncRNA upstream 152010 1365954 ~ 1366129 (+) True G189442
TU215323 lncRNA upstream 449420 1082113 ~ 1082292 (+) True G189565
TU215225 lncRNA upstream 503578 1027241 ~ 1028134 (+) True G189487
TU215215 lncRNA upstream 511799 1019614 ~ 1019913 (+) True G189477
TU216062 lncRNA downstream 25106 1557157 ~ 1557452 (+) True G190216
TU216066 lncRNA downstream 34594 1566645 ~ 1566951 (+) True G190220
TU216067 lncRNA downstream 42455 1574506 ~ 1574725 (+) True G190221
TU216119 lncRNA downstream 55495 1587546 ~ 1589765 (+) False G190249
TU216118 lncRNA downstream 56027 1588078 ~ 1589765 (+) False G190249
CI01000043_01423076_01424727.mRNA mRNA upstream 106982 1422804 ~ 1424730 (+) True CI01000043_01423076_01424727
CI01000043_01383746_01406582.mRNA mRNA upstream 125119 1382179 ~ 1406593 (+) True CI01000043_01383746_01406582
CI01000043_01366462_01369312.mRNA mRNA upstream 161825 1366462 ~ 1369887 (+) False CI01000043_01366462_01369312
CI01000043_00930835_00959810.mRNA mRNA upstream 571501 930329 ~ 960211 (+) True CI01000043_00930835_00959810
CI01000043_00898380_00913554.mRNA mRNA upstream 618065 898380 ~ 913647 (+) True CI01000043_00898380_00913554
CI01000043_01626021_01650266.mRNA mRNA downstream 93970 1626021 ~ 1651813 (+) True CI01000043_01626021_01650266
CI01000043_01704935_01732125.mRNA mRNA downstream 172782 1704833 ~ 1732221 (+) True CI01000043_01704935_01732125
CI01000043_01842605_01846888.mRNA mRNA downstream 308032 1840083 ~ 1846921 (+) False CI01000043_01842605_01846888
CI01000043_01896926_01915626.mRNA mRNA downstream 364875 1896926 ~ 1915626 (+) True CI01000043_01896926_01915626
CI01000043_01970557_01977108.mRNA mRNA downstream 438506 1970557 ~ 1977689 (+) True CI01000043_01970557_01977108
TU216107 other downstream 151505 1683556 ~ 1692479 (+) True G190241
TU216143 other downstream 909811 2441862 ~ 2443710 (+) True G190272
TU217666 other downstream 2371182 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 2775897 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 3460962 4993013 ~ 4993356 (+) True G192454

Expression Profile