RNA id: TU216214


Basic Information

Item Value
RNA id TU216214
length 226
lncRNA type inter_gene
GC content 0.22
exon number 1
gene id G190339
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 2160932 ~ 2161157 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTATGACGTCATAATTTAGATTTTTTATGTCATGACTATCATAATTTTTATTTTTCATGTTGTAATTTCAAGTTTTTATTATATAGTTTTGACTTGGTGTGTGAATTTCAACTTTTTATCTCAATTATGACATCATAATTTTGACTTTTTATGTCAAATGACTATCATAATTTTTACTTTTTGTATGATAATTTCAAGTTTTTATTATATAGCTTTGACTTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216213 lncRNA upstream 34104 2126528 ~ 2126828 (+) True G190338
TU216211 lncRNA upstream 37047 2123661 ~ 2123885 (+) True G190336
TU216177 lncRNA upstream 207125 1953494 ~ 1953807 (+) True G190306
TU216081 lncRNA upstream 233014 1921032 ~ 1927918 (+) True G190230
TU216133 lncRNA upstream 265691 1848463 ~ 1895241 (+) True G190262
TU216224 lncRNA downstream 30024 2191181 ~ 2195719 (+) True G190349
TU216095 lncRNA downstream 34031 2195188 ~ 2245380 (+) False G190235
TU216097 lncRNA downstream 46957 2208114 ~ 2245380 (+) True G190235
TU216239 lncRNA downstream 57977 2219134 ~ 2219562 (+) True G190364
TU216244 lncRNA downstream 89104 2250261 ~ 2250488 (+) True G190369
CI01000043_02129173_02152417.mRNA mRNA upstream 8265 2129173 ~ 2152667 (+) True CI01000043_02129173_02152417
CI01000043_02033302_02075904.mRNA mRNA upstream 84784 2033302 ~ 2076148 (+) True CI01000043_02033302_02075904
CI01000043_01992845_02000632.mRNA mRNA upstream 159315 1992845 ~ 2001617 (+) True CI01000043_01992845_02000632
CI01000043_01970557_01977108.mRNA mRNA upstream 183243 1970557 ~ 1977689 (+) True CI01000043_01970557_01977108
CI01000043_01896926_01915626.mRNA mRNA upstream 245306 1896926 ~ 1915626 (+) True CI01000043_01896926_01915626
CI01000043_02220697_02231568.mRNA mRNA downstream 59540 2220697 ~ 2232712 (+) True CI01000043_02220697_02231568
CI01000043_02278110_02287253.mRNA mRNA downstream 115464 2276621 ~ 2288074 (+) True CI01000043_02278110_02287253
CI01000043_02335484_02351163.mRNA mRNA downstream 174327 2335484 ~ 2351384 (+) True CI01000043_02335484_02351163
CI01000043_02375390_02413694.mRNA mRNA downstream 214233 2375390 ~ 2413793 (+) True CI01000043_02375390_02413694
CI01000043_02464522_02485377.mRNA mRNA downstream 303365 2464522 ~ 2486310 (+) True CI01000043_02464522_02485377
TU216107 other upstream 468453 1683556 ~ 1692479 (+) True G190241
TU216143 other downstream 280705 2441862 ~ 2443710 (+) True G190272
TU217666 other downstream 1742076 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 2146791 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 2831856 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 2952729 5113886 ~ 5118448 (+) True G192484

Expression Profile