RNA id: TU216239


Basic Information

Item Value
RNA id TU216239
length 202
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G190364
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 2219134 ~ 2219562 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAGCTCTTTGTCAGTGAGACTGGAGATTTGGATTCTCTCTCACTTGCTTTGAAATCACTCTAAAGATCAGGGATGACACTTTGTTTTTGTGATCATTTTGATACAGTACACTCAGACTAGTTATTATGGAAGCTTGTTTCCACCACAGAATTAAAAAATGTAAAAGATAAAAACTCGCAATTGCAAGTAAAAAGTCAGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216224 lncRNA upstream 23415 2191181 ~ 2195719 (+) True G190349
TU216214 lncRNA upstream 57977 2160932 ~ 2161157 (+) True G190339
TU216213 lncRNA upstream 92306 2126528 ~ 2126828 (+) True G190338
TU216211 lncRNA upstream 95249 2123661 ~ 2123885 (+) True G190336
TU216177 lncRNA upstream 265327 1953494 ~ 1953807 (+) True G190306
TU216244 lncRNA downstream 30699 2250261 ~ 2250488 (+) True G190369
TU216151 lncRNA downstream 46774 2266336 ~ 2267529 (+) True G190280
TU216100 lncRNA downstream 71558 2291120 ~ 2294501 (+) True G190237
TU216090 lncRNA downstream 134446 2354008 ~ 2355653 (+) True G190233
TU216263 lncRNA downstream 138785 2358347 ~ 2358652 (+) True G190385
CI01000043_02129173_02152417.mRNA mRNA upstream 66467 2129173 ~ 2152667 (+) True CI01000043_02129173_02152417
CI01000043_02033302_02075904.mRNA mRNA upstream 142986 2033302 ~ 2076148 (+) True CI01000043_02033302_02075904
CI01000043_01992845_02000632.mRNA mRNA upstream 217517 1992845 ~ 2001617 (+) True CI01000043_01992845_02000632
CI01000043_01970557_01977108.mRNA mRNA upstream 241445 1970557 ~ 1977689 (+) True CI01000043_01970557_01977108
CI01000043_01896926_01915626.mRNA mRNA upstream 303508 1896926 ~ 1915626 (+) True CI01000043_01896926_01915626
CI01000043_02220697_02231568.mRNA mRNA downstream 1135 2220697 ~ 2232712 (+) True CI01000043_02220697_02231568
CI01000043_02278110_02287253.mRNA mRNA downstream 57059 2276621 ~ 2288074 (+) True CI01000043_02278110_02287253
CI01000043_02335484_02351163.mRNA mRNA downstream 115922 2335484 ~ 2351384 (+) True CI01000043_02335484_02351163
CI01000043_02375390_02413694.mRNA mRNA downstream 155828 2375390 ~ 2413793 (+) True CI01000043_02375390_02413694
CI01000043_02464522_02485377.mRNA mRNA downstream 244960 2464522 ~ 2486310 (+) True CI01000043_02464522_02485377
TU216107 other upstream 526655 1683556 ~ 1692479 (+) True G190241
TU216143 other downstream 222300 2441862 ~ 2443710 (+) True G190272
TU217666 other downstream 1683671 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 2088386 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 2773451 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 2894324 5113886 ~ 5118448 (+) True G192484

Expression Profile