RNA id: TU216286


Basic Information

Item Value
RNA id TU216286
length 246
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G190408
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 2552123 ~ 2552368 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAACAATGGAAAAATCCTATTGGGTTTTTTGTTAAGGGGAAAAGGCTGATGCTAACTTACAGGTTGGCCTAAAAATAAGTCTTTACAGACATTCAAATGTAGTTACTCTAATAAGTAATTAATTACTAGCTACTAATTACATCTTCAACAGTGTAATTAGATTACTGTACTAATTACTCTCTAAAAAGTATTGCTTACTTATTACTAATTATTTCTAAATCCCATATAAACACTGACCAGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216279 lncRNA upstream 51063 2500774 ~ 2501060 (+) True G190401
TU216269 lncRNA upstream 101847 2449941 ~ 2450276 (+) True G190391
TU216263 lncRNA upstream 193471 2358347 ~ 2358652 (+) True G190385
TU216090 lncRNA upstream 196470 2354008 ~ 2355653 (+) True G190233
TU216100 lncRNA upstream 257622 2291120 ~ 2294501 (+) True G190237
TU216800 lncRNA downstream 60327 2612695 ~ 2613477 (+) True G190884
TU216909 lncRNA downstream 223240 2775608 ~ 2775815 (+) True G190991
TU216997 lncRNA downstream 545963 3098331 ~ 3098964 (+) True G191058
TU217002 lncRNA downstream 554844 3107212 ~ 3107703 (+) True G191063
TU217003 lncRNA downstream 555343 3107711 ~ 3107958 (+) True G191064
CI01000043_02504537_02519367.mRNA mRNA upstream 31491 2501923 ~ 2520632 (+) True CI01000043_02504537_02519367
CI01000043_02464522_02485377.mRNA mRNA upstream 65813 2464522 ~ 2486310 (+) True CI01000043_02464522_02485377
CI01000043_02375390_02413694.mRNA mRNA upstream 138330 2375390 ~ 2413793 (+) True CI01000043_02375390_02413694
CI01000043_02335484_02351163.mRNA mRNA upstream 200739 2335484 ~ 2351384 (+) True CI01000043_02335484_02351163
CI01000043_02278110_02287253.mRNA mRNA upstream 264049 2276621 ~ 2288074 (+) True CI01000043_02278110_02287253
CI01000043_02787002_02807892.mRNA mRNA downstream 234464 2786832 ~ 2808856 (+) True CI01000043_02787002_02807892
CI01000043_02834135_02840882.mRNA mRNA downstream 279681 2832049 ~ 2841013 (+) True CI01000043_02834135_02840882
CI01000043_02884506_02898339.mRNA mRNA downstream 332050 2884418 ~ 2898364 (+) True CI01000043_02884506_02898339
CI01000043_02945803_03044928.mRNA mRNA downstream 393435 2945803 ~ 3044928 (+) True CI01000043_02945803_03044928
CI01000043_03157095_03221503.mRNA mRNA downstream 604349 3156717 ~ 3222623 (+) True CI01000043_03157095_03221503
TU216143 other upstream 108413 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 859644 1683556 ~ 1692479 (+) True G190241
TU217666 other downstream 1350865 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 1755580 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 2440645 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 2561518 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 2617237 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795

Expression Profile