RNA id: TU217002


Basic Information

Item Value
RNA id TU217002
length 492
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G191063
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3107212 ~ 3107703 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAATATTTTTAATGATATAGTCTACATAGTTTCACGCTTCCAGCTAATTTCACCCTCTTTGTATGCAGACCTTGGGCTTTGCTCATGCAATTAGGGGTGGGAGATATGGCCAAAATCTTTTAATCAAGATTTGAGTCATTTTATTTCATGATAACAATATATGAAGAATTCCATTGCAAAAACCTCTAAGTCCATCTGACATCTTTTCTTATAAATGAGCGTTTATCAGGCTCTTATGTTTAGGTTTAGTAATTTCACTTTAATTTCAATGGAAAGGTTGTTATTCAGTTATTGAAATGCTTTATTTTCAAAAATGTCACTTTAGTCAATTCATTGGTATTTAACAAATTTCACTGTCTTTTGCTGCAAAACCAGCTAAGTCCATGTGTGCTTTTTTTTGCAAAACCTCAAAGTCCACCTCTTTGGACAACAAGACGTCAGTTTCTGTCAGTTTTACAGCAGCAAAAGGAACTCTGTTGGGTTTACTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216997 lncRNA upstream 8248 3098331 ~ 3098964 (+) True G191058
TU216909 lncRNA upstream 331397 2775608 ~ 2775815 (+) True G190991
TU216800 lncRNA upstream 493735 2612695 ~ 2613477 (+) True G190884
TU216286 lncRNA upstream 554844 2552123 ~ 2552368 (+) True G190408
TU216279 lncRNA upstream 606152 2500774 ~ 2501060 (+) True G190401
TU217003 lncRNA downstream 8 3107711 ~ 3107958 (+) True G191064
TU217005 lncRNA downstream 946 3108649 ~ 3108990 (+) True G191066
TU217006 lncRNA downstream 1336 3109039 ~ 3109292 (+) True G191067
TU217025 lncRNA downstream 30693 3138396 ~ 3139814 (+) True G191086
TU217033 lncRNA downstream 41501 3149204 ~ 3149688 (+) True G191094
CI01000043_02945803_03044928.mRNA mRNA upstream 62284 2945803 ~ 3044928 (+) True CI01000043_02945803_03044928
CI01000043_02884506_02898339.mRNA mRNA upstream 208848 2884418 ~ 2898364 (+) True CI01000043_02884506_02898339
CI01000043_02834135_02840882.mRNA mRNA upstream 266199 2832049 ~ 2841013 (+) True CI01000043_02834135_02840882
CI01000043_02787002_02807892.mRNA mRNA upstream 298356 2786832 ~ 2808856 (+) True CI01000043_02787002_02807892
CI01000043_02504537_02519367.mRNA mRNA upstream 586580 2501923 ~ 2520632 (+) True CI01000043_02504537_02519367
CI01000043_03157095_03221503.mRNA mRNA downstream 49014 3156717 ~ 3222623 (+) True CI01000043_03157095_03221503
CI01000043_03270751_03284680.mRNA mRNA downstream 163048 3270751 ~ 3284762 (+) True CI01000043_03270751_03284680
CI01000043_03292361_03301513.mRNA mRNA downstream 184658 3292361 ~ 3301513 (+) True CI01000043_03292361_03301513
CI01000043_03600460_03603309.mRNA mRNA downstream 492572 3600275 ~ 3603404 (+) True CI01000043_03600460_03603309
CI01000043_03630982_03636231.mRNA mRNA downstream 521601 3629304 ~ 3636429 (+) True CI01000043_03630982_03636231
TU216143 other upstream 663502 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 1414733 1683556 ~ 1692479 (+) True G190241
TU217666 other downstream 795530 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 1200245 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 1885310 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 2006183 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 2061902 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795

Expression Profile