Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU217025 |
| length | 1419 |
| lncRNA type | antisense_over |
| GC content | 0.41 |
| exon number | 1 |
| gene id | G191086 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000043 |
| NCBI id | null |
| chromosome length | 7746009 |
| location | 3138396 ~ 3139814 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU217006 | lncRNA | upstream | 29104 | 3109039 ~ 3109292 (+) | True | G191067 |
| TU217005 | lncRNA | upstream | 29406 | 3108649 ~ 3108990 (+) | True | G191066 |
| TU217003 | lncRNA | upstream | 30438 | 3107711 ~ 3107958 (+) | True | G191064 |
| TU217002 | lncRNA | upstream | 30693 | 3107212 ~ 3107703 (+) | True | G191063 |
| TU216997 | lncRNA | upstream | 39432 | 3098331 ~ 3098964 (+) | True | G191058 |
| TU217033 | lncRNA | downstream | 9390 | 3149204 ~ 3149688 (+) | True | G191094 |
| TU217036 | lncRNA | downstream | 11813 | 3151627 ~ 3151854 (+) | True | G191097 |
| TU217056 | lncRNA | downstream | 31021 | 3170835 ~ 3171075 (+) | True | G191117 |
| TU217072 | lncRNA | downstream | 48004 | 3187818 ~ 3188056 (+) | True | G191133 |
| TU217089 | lncRNA | downstream | 66075 | 3205889 ~ 3206111 (+) | True | G191150 |
| CI01000043_02945803_03044928.mRNA | mRNA | upstream | 93468 | 2945803 ~ 3044928 (+) | True | CI01000043_02945803_03044928 |
| CI01000043_02884506_02898339.mRNA | mRNA | upstream | 240032 | 2884418 ~ 2898364 (+) | True | CI01000043_02884506_02898339 |
| CI01000043_02834135_02840882.mRNA | mRNA | upstream | 297383 | 2832049 ~ 2841013 (+) | True | CI01000043_02834135_02840882 |
| CI01000043_02787002_02807892.mRNA | mRNA | upstream | 329540 | 2786832 ~ 2808856 (+) | True | CI01000043_02787002_02807892 |
| CI01000043_02504537_02519367.mRNA | mRNA | upstream | 617764 | 2501923 ~ 2520632 (+) | True | CI01000043_02504537_02519367 |
| CI01000043_03157095_03221503.mRNA | mRNA | downstream | 16903 | 3156717 ~ 3222623 (+) | True | CI01000043_03157095_03221503 |
| CI01000043_03270751_03284680.mRNA | mRNA | downstream | 130937 | 3270751 ~ 3284762 (+) | True | CI01000043_03270751_03284680 |
| CI01000043_03292361_03301513.mRNA | mRNA | downstream | 152547 | 3292361 ~ 3301513 (+) | True | CI01000043_03292361_03301513 |
| CI01000043_03600460_03603309.mRNA | mRNA | downstream | 460461 | 3600275 ~ 3603404 (+) | True | CI01000043_03600460_03603309 |
| CI01000043_03630982_03636231.mRNA | mRNA | downstream | 489490 | 3629304 ~ 3636429 (+) | True | CI01000043_03630982_03636231 |
| TU216143 | other | upstream | 694686 | 2441862 ~ 2443710 (+) | True | G190272 |
| TU216107 | other | upstream | 1445917 | 1683556 ~ 1692479 (+) | True | G190241 |
| TU217666 | other | downstream | 763419 | 3903233 ~ 3909966 (+) | True | G191670 |
| TU217639 | other | downstream | 1168134 | 4307948 ~ 4350614 (+) | True | G191644 |
| TU218497 | other | downstream | 1853199 | 4993013 ~ 4993356 (+) | True | G192454 |
| TU218527 | other | downstream | 1974072 | 5113886 ~ 5118448 (+) | True | G192484 |
| TU218579 | other | downstream | 2029791 | 5169605 ~ 5171730 (+) | False | CI01000043_05169578_05171795 |
