RNA id: TU217033


Basic Information

Item Value
RNA id TU217033
length 485
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G191094
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3149204 ~ 3149688 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATATAACATTGTTTTATTTGTATCTTTATATATTTTTATCGTGGTATCGACTTTGGTATCGAGTATTGTGCACTTTTGGTGGTATCGGTACCGACTACTAGATTTTTGTTATCATGACATCCCTGTTTGTTACTAAAATTGTTTTTAAGTATAATAGTATGTTTTAATAAAGCTAAAATGTTTTAAAAAGCTAAAAAAGGCTAAACTATTCCATGTTTGACTCATATTTAAATTATTAAAAAACTTTCTATTGTCTATCCTGTCAAGGTTTATAAGGATTTTAAGAAGTAGCCTAATTAGTAACGAGTTTAATTATTTATTGAGTAATTAAATTACTTTTCAGACAGAGTAATTAGAAAAGTATTTAAAATACAACATTGATGATGTAATTAGTAATTAATTACTTTTTTGAAGTAACTTACCCAACACTGACGGTGTTGCACAGCTGCAGAGGCTTGCGGTCCATTTTCAAGAAGTATGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217025 lncRNA upstream 9390 3138396 ~ 3139814 (+) True G191086
TU217006 lncRNA upstream 39912 3109039 ~ 3109292 (+) True G191067
TU217005 lncRNA upstream 40214 3108649 ~ 3108990 (+) True G191066
TU217003 lncRNA upstream 41246 3107711 ~ 3107958 (+) True G191064
TU217002 lncRNA upstream 41501 3107212 ~ 3107703 (+) True G191063
TU217036 lncRNA downstream 1939 3151627 ~ 3151854 (+) True G191097
TU217056 lncRNA downstream 21147 3170835 ~ 3171075 (+) True G191117
TU217072 lncRNA downstream 38130 3187818 ~ 3188056 (+) True G191133
TU217089 lncRNA downstream 56201 3205889 ~ 3206111 (+) True G191150
TU217126 lncRNA downstream 132397 3282085 ~ 3283570 (+) True G191182
CI01000043_02945803_03044928.mRNA mRNA upstream 104276 2945803 ~ 3044928 (+) True CI01000043_02945803_03044928
CI01000043_02884506_02898339.mRNA mRNA upstream 250840 2884418 ~ 2898364 (+) True CI01000043_02884506_02898339
CI01000043_02834135_02840882.mRNA mRNA upstream 308191 2832049 ~ 2841013 (+) True CI01000043_02834135_02840882
CI01000043_02787002_02807892.mRNA mRNA upstream 340348 2786832 ~ 2808856 (+) True CI01000043_02787002_02807892
CI01000043_02504537_02519367.mRNA mRNA upstream 628572 2501923 ~ 2520632 (+) True CI01000043_02504537_02519367
CI01000043_03157095_03221503.mRNA mRNA downstream 7029 3156717 ~ 3222623 (+) True CI01000043_03157095_03221503
CI01000043_03270751_03284680.mRNA mRNA downstream 121063 3270751 ~ 3284762 (+) True CI01000043_03270751_03284680
CI01000043_03292361_03301513.mRNA mRNA downstream 142673 3292361 ~ 3301513 (+) True CI01000043_03292361_03301513
CI01000043_03600460_03603309.mRNA mRNA downstream 450587 3600275 ~ 3603404 (+) True CI01000043_03600460_03603309
CI01000043_03630982_03636231.mRNA mRNA downstream 479616 3629304 ~ 3636429 (+) True CI01000043_03630982_03636231
TU216143 other upstream 705494 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 1456725 1683556 ~ 1692479 (+) True G190241
TU217666 other downstream 753545 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 1158260 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 1843325 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 1964198 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 2019917 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795

Expression Profile