RNA id: TU217466


Basic Information

Item Value
RNA id TU217466
length 276
lncRNA type intronic
GC content 0.59
exon number 1
gene id G191489
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3167897 ~ 3168172 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGCCTTTAGCCTCCTCGTTAGAGCGTCCGACTCCCACACCGGAGACCCAGGTTCGAGGCCCGTGCAGAGTGGGGCGAGTAGGACCGGGGTTACATTGGTGCCGTGACCCAGATGGGAGTGAGGTTTAGGGGGGTGAGTGTAACGGAGGCCAGCTAGTAGTTGCTGTGCAAGTAAACCTCACTCCTCTGATCTCAAGAGATGCTCTAGCGACTGACGCTAGAGGTCGCACCCTTTAGCCTCCTCGTTAAAGCGTCCGACTCCCACGCCAGAAACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217460 lncRNA downstream 16826 3150831 ~ 3151071 (-) True G191483
TU217255 lncRNA downstream 283350 2880396 ~ 2884547 (-) True G191299
TU216789 lncRNA downstream 573305 2594314 ~ 2594592 (-) True G190873
TU216785 lncRNA downstream 619597 2548070 ~ 2548300 (-) True G190869
TU216777 lncRNA downstream 640204 2527180 ~ 2527693 (-) True G190861
TU217468 lncRNA upstream 2198 3170370 ~ 3170592 (-) True G191491
TU217483 lncRNA upstream 42565 3210737 ~ 3213930 (-) True G191506
TU217487 lncRNA upstream 47977 3216149 ~ 3216495 (-) True G191510
TU217488 lncRNA upstream 48497 3216669 ~ 3216870 (-) True G191511
TU217494 lncRNA upstream 63921 3232093 ~ 3232326 (-) True G191517
CI01000043_03138222_03139281.mRNA mRNA downstream 28264 3137166 ~ 3139633 (-) True CI01000043_03138222_03139281
CI01000043_03133480_03136057.mRNA mRNA downstream 31572 3133429 ~ 3136325 (-) True CI01000043_03133480_03136057
CI01000043_02912881_02924260.mRNA mRNA downstream 243482 2912876 ~ 2924415 (-) True CI01000043_02912881_02924260
CI01000043_02868129_02876445.mRNA mRNA downstream 291432 2867416 ~ 2876465 (-) True CI01000043_02868129_02876445
CI01000043_02725571_02730393.mRNA mRNA downstream 437037 2725152 ~ 2730860 (-) True CI01000043_02725571_02730393
CI01000043_03325623_03351622.mRNA mRNA upstream 157216 3325388 ~ 3353062 (-) True CI01000043_03325623_03351622
CI01000043_03356337_03361772.mRNA mRNA upstream 187879 3356051 ~ 3363143 (-) True CI01000043_03356337_03361772
CI01000043_03377513_03382227.mRNA mRNA upstream 208733 3376905 ~ 3382425 (-) True CI01000043_03377513_03382227
CI01000043_03452739_03529381.mRNA mRNA upstream 283419 3451591 ~ 3529693 (-) True CI01000043_03452739_03529381
CI01000043_03539141_03543311.mRNA mRNA upstream 370933 3539105 ~ 3543892 (-) True CI01000043_03539141_03543311
TU217252 other downstream 118033 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 918417 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 2284729 825737 ~ 883168 (-) False G189881
TU215686 other downstream 2284729 871379 ~ 883168 (-) True G189881
TU215693 other downstream 2293632 814747 ~ 874265 (-) False G189881
TU218131 other upstream 1163739 4331911 ~ 4332726 (-) True G192109
TU219083 other upstream 2288325 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 2425509 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 3087400 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 3395168 6563340 ~ 6566039 (-) True G193922

Expression Profile