RNA id: TU217072


Basic Information

Item Value
RNA id TU217072
length 239
lncRNA type intronic
GC content 0.42
exon number 1
gene id G191133
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3187818 ~ 3188056 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCCAGTTCCGTTTTCTTCGTTAGTTGAATACGGAAGGCGGTCTGGCAGAAGGTAAATATTTTACTTCATAACTTGTTAAATATGGATATTTTTTTTACACAAACGCATCGCTTTGCTTCAGAAGGCCTTTATTAACCCCCGGAGCCGTGTGGAGTACGTTTATGATGGATGGATGCACTTTCTTCAGCTCATACTCGTTGGTCCCGTTCACTGCTATTATAAAGCTTGGATGTGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217056 lncRNA upstream 16743 3170835 ~ 3171075 (+) True G191117
TU217036 lncRNA upstream 35964 3151627 ~ 3151854 (+) True G191097
TU217033 lncRNA upstream 38130 3149204 ~ 3149688 (+) True G191094
TU217025 lncRNA upstream 48004 3138396 ~ 3139814 (+) True G191086
TU217006 lncRNA upstream 78526 3109039 ~ 3109292 (+) True G191067
TU217089 lncRNA downstream 17833 3205889 ~ 3206111 (+) True G191150
TU217126 lncRNA downstream 94029 3282085 ~ 3283570 (+) True G191182
TU217127 lncRNA downstream 96775 3284831 ~ 3285055 (+) True G191183
TU216995 lncRNA downstream 158883 3346939 ~ 3351641 (+) True G191056
TU217169 lncRNA downstream 244540 3432596 ~ 3432894 (+) True G191224
CI01000043_02945803_03044928.mRNA mRNA upstream 142890 2945803 ~ 3044928 (+) True CI01000043_02945803_03044928
CI01000043_02884506_02898339.mRNA mRNA upstream 289454 2884418 ~ 2898364 (+) True CI01000043_02884506_02898339
CI01000043_02834135_02840882.mRNA mRNA upstream 346805 2832049 ~ 2841013 (+) True CI01000043_02834135_02840882
CI01000043_02787002_02807892.mRNA mRNA upstream 378962 2786832 ~ 2808856 (+) True CI01000043_02787002_02807892
CI01000043_02504537_02519367.mRNA mRNA upstream 667186 2501923 ~ 2520632 (+) True CI01000043_02504537_02519367
CI01000043_03270751_03284680.mRNA mRNA downstream 82695 3270751 ~ 3284762 (+) True CI01000043_03270751_03284680
CI01000043_03292361_03301513.mRNA mRNA downstream 104305 3292361 ~ 3301513 (+) True CI01000043_03292361_03301513
CI01000043_03600460_03603309.mRNA mRNA downstream 412219 3600275 ~ 3603404 (+) True CI01000043_03600460_03603309
CI01000043_03630982_03636231.mRNA mRNA downstream 441248 3629304 ~ 3636429 (+) True CI01000043_03630982_03636231
CI01000043_03678916_03691863.mRNA mRNA downstream 490760 3678816 ~ 3692052 (+) True CI01000043_03678916_03691863
TU216143 other upstream 744108 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 1495339 1683556 ~ 1692479 (+) True G190241
TU217666 other downstream 715177 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 1119892 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 1804957 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 1925830 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 1981549 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795

Expression Profile