RNA id: TU217089


Basic Information

Item Value
RNA id TU217089
length 223
lncRNA type intronic
GC content 0.45
exon number 1
gene id G191150
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3205889 ~ 3206111 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTGGGGAAGGTGGAGGGTTTCTGAAAGCGTGCTGCACTGCTATTGCTAATGCTGAGTATTTGAAGGTTGAGCAGCGAGCTCATTGGCTACTGATACAGCAGGAACTAATCAGCTGTGCCCTATAGAGAATGATGTGATTGCAAGCAGATTTAGTTAAGGACCTATCAGCCTGTGCCATCAAGAGTTTCATGACAGAACTTTGTATTTGAACAAGCAGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217072 lncRNA upstream 17833 3187818 ~ 3188056 (+) True G191133
TU217056 lncRNA upstream 34814 3170835 ~ 3171075 (+) True G191117
TU217036 lncRNA upstream 54035 3151627 ~ 3151854 (+) True G191097
TU217033 lncRNA upstream 56201 3149204 ~ 3149688 (+) True G191094
TU217025 lncRNA upstream 66075 3138396 ~ 3139814 (+) True G191086
TU217126 lncRNA downstream 75974 3282085 ~ 3283570 (+) True G191182
TU217127 lncRNA downstream 78720 3284831 ~ 3285055 (+) True G191183
TU216995 lncRNA downstream 140828 3346939 ~ 3351641 (+) True G191056
TU217169 lncRNA downstream 226485 3432596 ~ 3432894 (+) True G191224
TU217171 lncRNA downstream 240901 3447012 ~ 3447221 (+) True G191226
CI01000043_02945803_03044928.mRNA mRNA upstream 160961 2945803 ~ 3044928 (+) True CI01000043_02945803_03044928
CI01000043_02884506_02898339.mRNA mRNA upstream 307525 2884418 ~ 2898364 (+) True CI01000043_02884506_02898339
CI01000043_02834135_02840882.mRNA mRNA upstream 364876 2832049 ~ 2841013 (+) True CI01000043_02834135_02840882
CI01000043_02787002_02807892.mRNA mRNA upstream 397033 2786832 ~ 2808856 (+) True CI01000043_02787002_02807892
CI01000043_02504537_02519367.mRNA mRNA upstream 685257 2501923 ~ 2520632 (+) True CI01000043_02504537_02519367
CI01000043_03270751_03284680.mRNA mRNA downstream 64640 3270751 ~ 3284762 (+) True CI01000043_03270751_03284680
CI01000043_03292361_03301513.mRNA mRNA downstream 86250 3292361 ~ 3301513 (+) True CI01000043_03292361_03301513
CI01000043_03600460_03603309.mRNA mRNA downstream 394164 3600275 ~ 3603404 (+) True CI01000043_03600460_03603309
CI01000043_03630982_03636231.mRNA mRNA downstream 423193 3629304 ~ 3636429 (+) True CI01000043_03630982_03636231
CI01000043_03678916_03691863.mRNA mRNA downstream 472705 3678816 ~ 3692052 (+) True CI01000043_03678916_03691863
TU216143 other upstream 762179 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 1513410 1683556 ~ 1692479 (+) True G190241
TU217666 other downstream 697122 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 1101837 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 1786902 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 1907775 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 1963494 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795

Expression Profile