RNA id: TU217487



Basic Information


Item Value
RNA id TU217487
length 347
lncRNA type intronic
GC content 0.37
exon number 1
gene id G191510
representative True

Chromosome Information


Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3216149 ~ 3216495 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTAGAATAGTTGTTTTATTCTACATAGAGTGGATAGCATGATTAGAGCACTACATCCTCTGGCTTCAGTTAGACCCGGTATTAACATCCTGTTCAGGTGATCTCACTTTGAAATGGTACAAGGCTAAATAGAAATATAAATTGCGTTACAAATGTTTTGAGATTAGTTTACTTCAACCACATTCTGAAGTGGACAAAAATACATATGACCACAATGCACTGTAAACCAAGGCCATAACCACCACTGACAAATAGCTTGACAAGCCAAATTATATTAATTTACTGTTTACAGACAATGAATATGGATTCCAGTGTGACGCTTCAGTTCGGTTTCGATGACAGAGTGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU217483 lncRNA downstream 2219 3210737 ~ 3213930 (-) True G191506
TU217468 lncRNA downstream 45557 3170370 ~ 3170592 (-) True G191491
TU217466 lncRNA downstream 47977 3167897 ~ 3168172 (-) True G191489
TU217460 lncRNA downstream 65078 3150831 ~ 3151071 (-) True G191483
TU217255 lncRNA downstream 331602 2880396 ~ 2884547 (-) True G191299
TU217488 lncRNA upstream 174 3216669 ~ 3216870 (-) True G191511
TU217494 lncRNA upstream 15598 3232093 ~ 3232326 (-) True G191517
TU217512 lncRNA upstream 36580 3253075 ~ 3253275 (-) True G191534
TU217513 lncRNA upstream 37472 3253967 ~ 3254272 (-) True G191535
TU217514 lncRNA upstream 39707 3256202 ~ 3256427 (-) True G191536
CI01000043_03138222_03139281.mRNA mRNA downstream 76516 3137166 ~ 3139633 (-) True CI01000043_03138222_03139281
CI01000043_03133480_03136057.mRNA mRNA downstream 79824 3133429 ~ 3136325 (-) True CI01000043_03133480_03136057
CI01000043_02912881_02924260.mRNA mRNA downstream 291734 2912876 ~ 2924415 (-) True CI01000043_02912881_02924260
CI01000043_02868129_02876445.mRNA mRNA downstream 339684 2867416 ~ 2876465 (-) True CI01000043_02868129_02876445
CI01000043_02725571_02730393.mRNA mRNA downstream 485289 2725152 ~ 2730860 (-) True CI01000043_02725571_02730393
CI01000043_03325623_03351622.mRNA mRNA upstream 108893 3325388 ~ 3353062 (-) True CI01000043_03325623_03351622
CI01000043_03356337_03361772.mRNA mRNA upstream 139556 3356051 ~ 3363143 (-) True CI01000043_03356337_03361772
CI01000043_03377513_03382227.mRNA mRNA upstream 160410 3376905 ~ 3382425 (-) True CI01000043_03377513_03382227
CI01000043_03452739_03529381.mRNA mRNA upstream 235096 3451591 ~ 3529693 (-) True CI01000043_03452739_03529381
CI01000043_03539141_03543311.mRNA mRNA upstream 322610 3539105 ~ 3543892 (-) True CI01000043_03539141_03543311
TU217252 other downstream 166285 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 966669 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 2332981 825737 ~ 883168 (-) False G189881
TU215686 other downstream 2332981 871379 ~ 883168 (-) True G189881
TU215693 other downstream 2341884 814747 ~ 874265 (-) False G189881
TU218131 other upstream 1115416 4331911 ~ 4332726 (-) True G192109
TU219083 other upstream 2240002 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 2377186 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 3039077 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 3346845 6563340 ~ 6566039 (-) True G193922

Expression Profile