RNA id: TU217515


Basic Information

Item Value
RNA id TU217515
length 230
lncRNA type antisense_over
GC content 0.57
exon number 1
gene id G191537
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3270999 ~ 3271228 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGTGGGCCTCTTTCAGGTCCTCCTCTCGGCTATGCAGAGCGTTCTCTAGTTGGGCGATCTTGCTGAGGCAGGCCTGGTACTTGTGTTTGCAGAGCTCGAGGGATTCACTAAGAGGTTGTAGTCGGGCCTCTGCATCTGTGGCCAGTTTCTCAGCCTCCAGCAAACCTGCCTTCAGCTGAATCAACTCTGCATCCTGACTGGGGAGAGCTGCTTCCCTGCAGGAGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217514 lncRNA downstream 14572 3256202 ~ 3256427 (-) True G191536
TU217513 lncRNA downstream 16727 3253967 ~ 3254272 (-) True G191535
TU217512 lncRNA downstream 17724 3253075 ~ 3253275 (-) True G191534
TU217494 lncRNA downstream 38673 3232093 ~ 3232326 (-) True G191517
TU217488 lncRNA downstream 54129 3216669 ~ 3216870 (-) True G191511
TU217516 lncRNA upstream 798 3272026 ~ 3272262 (-) True G191538
TU217517 lncRNA upstream 9844 3281072 ~ 3281308 (-) True G191539
TU217549 lncRNA upstream 156249 3427477 ~ 3427776 (-) True G191569
TU217562 lncRNA upstream 267042 3538270 ~ 3538681 (-) True G191582
TU217588 lncRNA upstream 376821 3648049 ~ 3648332 (-) True G191601
CI01000043_03138222_03139281.mRNA mRNA downstream 131366 3137166 ~ 3139633 (-) True CI01000043_03138222_03139281
CI01000043_03133480_03136057.mRNA mRNA downstream 134674 3133429 ~ 3136325 (-) True CI01000043_03133480_03136057
CI01000043_02912881_02924260.mRNA mRNA downstream 346584 2912876 ~ 2924415 (-) True CI01000043_02912881_02924260
CI01000043_02868129_02876445.mRNA mRNA downstream 394534 2867416 ~ 2876465 (-) True CI01000043_02868129_02876445
CI01000043_02725571_02730393.mRNA mRNA downstream 540139 2725152 ~ 2730860 (-) True CI01000043_02725571_02730393
CI01000043_03325623_03351622.mRNA mRNA upstream 54160 3325388 ~ 3353062 (-) True CI01000043_03325623_03351622
CI01000043_03356337_03361772.mRNA mRNA upstream 84823 3356051 ~ 3363143 (-) True CI01000043_03356337_03361772
CI01000043_03377513_03382227.mRNA mRNA upstream 105677 3376905 ~ 3382425 (-) True CI01000043_03377513_03382227
CI01000043_03452739_03529381.mRNA mRNA upstream 180363 3451591 ~ 3529693 (-) True CI01000043_03452739_03529381
CI01000043_03539141_03543311.mRNA mRNA upstream 267877 3539105 ~ 3543892 (-) True CI01000043_03539141_03543311
TU217252 other downstream 221135 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 1021519 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 2387831 825737 ~ 883168 (-) False G189881
TU215686 other downstream 2387831 871379 ~ 883168 (-) True G189881
TU215693 other downstream 2396734 814747 ~ 874265 (-) False G189881
TU218131 other upstream 1060683 4331911 ~ 4332726 (-) True G192109
TU219083 other upstream 2185269 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 2322453 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 2984344 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 3292112 6563340 ~ 6566039 (-) True G193922

Expression Profile