RNA id: TU217549


Basic Information

Item Value
RNA id TU217549
length 300
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G191569
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3427477 ~ 3427776 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGATTCTTAATACTGTGTGTGGTTACCTGGATGATCTACGACTGTTTTTTTGTTTTGTGATGGTTGTTCATGAGTCCCTTGTTTGTTCTGAGCAGTTAAACTGAGCTCTGTTCTTCAGAAAAAATCTCCAGGTCCTGCAGATTCTTCAGTTTTCAAGGATTTTTTGCATATTTGAACCCTTTCCAGCAGTGACTGAATGATTTTGAGATCCATCTTTTCACACTGAGGACAACTGAGGGACTCAAACACAACTATTAAAAAAGGTTCAAACATTCACTGATGCTCCAGAAGGAAACACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217517 lncRNA downstream 146169 3281072 ~ 3281308 (-) True G191539
TU217516 lncRNA downstream 155215 3272026 ~ 3272262 (-) True G191538
TU217515 lncRNA downstream 156249 3270999 ~ 3271228 (-) True G191537
TU217514 lncRNA downstream 171050 3256202 ~ 3256427 (-) True G191536
TU217513 lncRNA downstream 173205 3253967 ~ 3254272 (-) True G191535
TU217562 lncRNA upstream 110494 3538270 ~ 3538681 (-) True G191582
TU217588 lncRNA upstream 220273 3648049 ~ 3648332 (-) True G191601
TU217607 lncRNA upstream 268795 3696571 ~ 3703622 (-) True G191620
TU217618 lncRNA upstream 278381 3706157 ~ 3712416 (-) False G191627
TU217617 lncRNA upstream 284075 3711851 ~ 3712416 (-) True G191627
CI01000043_03377513_03382227.mRNA mRNA downstream 45052 3376905 ~ 3382425 (-) True CI01000043_03377513_03382227
CI01000043_03356337_03361772.mRNA mRNA downstream 64334 3356051 ~ 3363143 (-) True CI01000043_03356337_03361772
CI01000043_03325623_03351622.mRNA mRNA downstream 74415 3325388 ~ 3353062 (-) True CI01000043_03325623_03351622
CI01000043_03138222_03139281.mRNA mRNA downstream 287844 3137166 ~ 3139633 (-) True CI01000043_03138222_03139281
CI01000043_03133480_03136057.mRNA mRNA downstream 291152 3133429 ~ 3136325 (-) True CI01000043_03133480_03136057
CI01000043_03452739_03529381.mRNA mRNA upstream 23815 3451591 ~ 3529693 (-) True CI01000043_03452739_03529381
CI01000043_03539141_03543311.mRNA mRNA upstream 111329 3539105 ~ 3543892 (-) True CI01000043_03539141_03543311
CI01000043_03548130_03586519.mRNA mRNA upstream 120034 3547810 ~ 3586936 (-) True CI01000043_03548130_03586519
CI01000043_03636807_03672561.mRNA mRNA upstream 208695 3636471 ~ 3672680 (-) True CI01000043_03636807_03672561
CI01000043_03750004_03772251.mRNA mRNA upstream 322066 3749842 ~ 3772506 (-) True CI01000043_03750004_03772251
TU217252 other downstream 377613 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 1177997 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 2544309 825737 ~ 883168 (-) False G189881
TU215686 other downstream 2544309 871379 ~ 883168 (-) True G189881
TU215693 other downstream 2553212 814747 ~ 874265 (-) False G189881
TU218131 other upstream 904135 4331911 ~ 4332726 (-) True G192109
TU219083 other upstream 2028721 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 2165905 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 2827796 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 3135564 6563340 ~ 6566039 (-) True G193922

Expression Profile