RNA id: TU217169


Basic Information

Item Value
RNA id TU217169
length 299
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G191224
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3432596 ~ 3432894 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGGTCCTAAGTATTCAGACCCTTTGCTCAGTATTTAGTAGAAGCACCCTTTTGATCTAATACAGCCATGAGTCTTTTTGGGAAAGATGCAACAAGTTTTTCACACCTGGATTTGGGGATCCTCTGCCATTCCTCCTTGCAGATCCTCTCCAGTTCTGTCAGGTTGGATGGTAAACATTGGTGGACAGCCATTTTTAGGTCTCTCCAGAGATGCTCAATTGGGTTTAAGTCAGGGCTCTGGCTGGGCCATTCAAGAACAGTCACGGAGTTGTTGTGAAGCCACTCCTTCGTTATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216995 lncRNA upstream 80955 3346939 ~ 3351641 (+) True G191056
TU217127 lncRNA upstream 147541 3284831 ~ 3285055 (+) True G191183
TU217126 lncRNA upstream 149026 3282085 ~ 3283570 (+) True G191182
TU217089 lncRNA upstream 226485 3205889 ~ 3206111 (+) True G191150
TU217072 lncRNA upstream 244540 3187818 ~ 3188056 (+) True G191133
TU217171 lncRNA downstream 14118 3447012 ~ 3447221 (+) True G191226
TU217173 lncRNA downstream 16271 3449165 ~ 3451134 (+) True G191228
TU216981 lncRNA downstream 46392 3479286 ~ 3543374 (+) False G191047
TU216978 lncRNA downstream 50283 3483177 ~ 3539386 (+) False G191047
TU216976 lncRNA downstream 95907 3528801 ~ 3539386 (+) False G191047
CI01000043_03292361_03301513.mRNA mRNA upstream 131083 3292361 ~ 3301513 (+) True CI01000043_03292361_03301513
CI01000043_03270751_03284680.mRNA mRNA upstream 147834 3270751 ~ 3284762 (+) True CI01000043_03270751_03284680
CI01000043_03157095_03221503.mRNA mRNA upstream 209973 3156717 ~ 3222623 (+) True CI01000043_03157095_03221503
CI01000043_02945803_03044928.mRNA mRNA upstream 387668 2945803 ~ 3044928 (+) True CI01000043_02945803_03044928
CI01000043_02884506_02898339.mRNA mRNA upstream 534232 2884418 ~ 2898364 (+) True CI01000043_02884506_02898339
CI01000043_03600460_03603309.mRNA mRNA downstream 167381 3600275 ~ 3603404 (+) True CI01000043_03600460_03603309
CI01000043_03630982_03636231.mRNA mRNA downstream 196410 3629304 ~ 3636429 (+) True CI01000043_03630982_03636231
CI01000043_03678916_03691863.mRNA mRNA downstream 245922 3678816 ~ 3692052 (+) True CI01000043_03678916_03691863
CI01000043_03696702_03699679.mRNA mRNA downstream 263576 3696470 ~ 3699879 (+) True CI01000043_03696702_03699679
CI01000043_03718802_03730935.mRNA mRNA downstream 285066 3717960 ~ 3731638 (+) True CI01000043_03718802_03730935
TU216143 other upstream 988886 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 1740117 1683556 ~ 1692479 (+) True G190241
TU217666 other downstream 470339 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 875054 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 1560119 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 1680992 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 1736711 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795

Expression Profile