RNA id: TU217212


Basic Information

Item Value
RNA id TU217212
length 327
lncRNA type intronic
GC content 0.31
exon number 1
gene id G191265
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3572246 ~ 3572572 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACGCTGTTGGCTGAGAGCAGTGACCTCTATTGCTCAGAAAACGTTACTGCAGTTCTCTTCATTCATGGCAAACACAGGAAATAAAATCAAACGAATAAAAATAAAGTATTACAACTGTACTTATTATTATTAGTTATAAGTATTAATAATTATTTAATCCTAACTTCAATTTAAAATAATTTTATTTAATTTTAGGCCGATTACAGCCACAGATGGAAAAAAAGGCGGAAAGACGATAAAAATTGAATCATTTATGTGGGTCTAGTCTTTGCATCTGTTTGTTTGAGTTTTAATTCAGGTCTCCTCTGATGGAGTATAATTAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216981 lncRNA upstream 28872 3479286 ~ 3543374 (+) False G191047
TU216982 lncRNA upstream 28872 3528801 ~ 3543374 (+) False G191047
TU216977 lncRNA upstream 28872 3540864 ~ 3543374 (+) True G191047
TU216978 lncRNA upstream 32860 3483177 ~ 3539386 (+) False G191047
TU216976 lncRNA upstream 32860 3528801 ~ 3539386 (+) False G191047
TU217226 lncRNA downstream 71165 3643737 ~ 3644012 (+) True G191272
TU217227 lncRNA downstream 73266 3645838 ~ 3646264 (+) True G191273
TU217229 lncRNA downstream 76504 3649076 ~ 3649572 (+) True G191275
TU217231 lncRNA downstream 78668 3651240 ~ 3651469 (+) True G191277
TU217232 lncRNA downstream 79353 3651925 ~ 3652233 (+) True G191278
CI01000043_03292361_03301513.mRNA mRNA upstream 270733 3292361 ~ 3301513 (+) True CI01000043_03292361_03301513
CI01000043_03270751_03284680.mRNA mRNA upstream 287484 3270751 ~ 3284762 (+) True CI01000043_03270751_03284680
CI01000043_03157095_03221503.mRNA mRNA upstream 349623 3156717 ~ 3222623 (+) True CI01000043_03157095_03221503
CI01000043_02945803_03044928.mRNA mRNA upstream 527318 2945803 ~ 3044928 (+) True CI01000043_02945803_03044928
CI01000043_02884506_02898339.mRNA mRNA upstream 673882 2884418 ~ 2898364 (+) True CI01000043_02884506_02898339
CI01000043_03600460_03603309.mRNA mRNA downstream 27703 3600275 ~ 3603404 (+) True CI01000043_03600460_03603309
CI01000043_03630982_03636231.mRNA mRNA downstream 56732 3629304 ~ 3636429 (+) True CI01000043_03630982_03636231
CI01000043_03678916_03691863.mRNA mRNA downstream 106244 3678816 ~ 3692052 (+) True CI01000043_03678916_03691863
CI01000043_03696702_03699679.mRNA mRNA downstream 123898 3696470 ~ 3699879 (+) True CI01000043_03696702_03699679
CI01000043_03718802_03730935.mRNA mRNA downstream 145388 3717960 ~ 3731638 (+) True CI01000043_03718802_03730935
TU216143 other upstream 1128536 2441862 ~ 2443710 (+) True G190272
TU216107 other upstream 1879767 1683556 ~ 1692479 (+) True G190241
TU217666 other downstream 330661 3903233 ~ 3909966 (+) True G191670
TU217639 other downstream 735376 4307948 ~ 4350614 (+) True G191644
TU218497 other downstream 1420441 4993013 ~ 4993356 (+) True G192454
TU218527 other downstream 1541314 5113886 ~ 5118448 (+) True G192484
TU218579 other downstream 1597033 5169605 ~ 5171730 (+) False CI01000043_05169578_05171795

Expression Profile