RNA id: TU217588


Basic Information

Item Value
RNA id TU217588
length 284
lncRNA type intronic
GC content 0.40
exon number 1
gene id G191601
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3648049 ~ 3648332 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTAAACACCACTTCCCTTTGTCAGCAAGCCTCTAAGTCCACAGAAGAACCAGTCGGAAGATGTGAATTGAATGATTTGATTTCAATATGAATGACGGTGTGTGTATGAGCCACTTTCAATTGCAGAGCTGCAAGTTTTTATCATGTTTTGTTTATCATTACAGTGGCAATTATGACAGGATTTCGCGAGTAGCAAGTAAACACAACAGTGTTCCTTTTGCTGCTGTAAAACTGACAGAAACAGACATTTTACTATGTCTTGTTGTCCAAAGTGGTGGACTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217562 lncRNA downstream 109368 3538270 ~ 3538681 (-) True G191582
TU217549 lncRNA downstream 220273 3427477 ~ 3427776 (-) True G191569
TU217517 lncRNA downstream 366741 3281072 ~ 3281308 (-) True G191539
TU217516 lncRNA downstream 375787 3272026 ~ 3272262 (-) True G191538
TU217515 lncRNA downstream 376821 3270999 ~ 3271228 (-) True G191537
TU217607 lncRNA upstream 48239 3696571 ~ 3703622 (-) True G191620
TU217618 lncRNA upstream 57825 3706157 ~ 3712416 (-) False G191627
TU217617 lncRNA upstream 63519 3711851 ~ 3712416 (-) True G191627
TU217827 lncRNA upstream 88267 3736599 ~ 3737993 (-) True G191826
TU217893 lncRNA upstream 204512 3852844 ~ 3853158 (-) True G191891
CI01000043_03548130_03586519.mRNA mRNA downstream 61113 3547810 ~ 3586936 (-) True CI01000043_03548130_03586519
CI01000043_03539141_03543311.mRNA mRNA downstream 104157 3539105 ~ 3543892 (-) True CI01000043_03539141_03543311
CI01000043_03452739_03529381.mRNA mRNA downstream 118356 3451591 ~ 3529693 (-) True CI01000043_03452739_03529381
CI01000043_03377513_03382227.mRNA mRNA downstream 265624 3376905 ~ 3382425 (-) True CI01000043_03377513_03382227
CI01000043_03356337_03361772.mRNA mRNA downstream 284906 3356051 ~ 3363143 (-) True CI01000043_03356337_03361772
CI01000043_03750004_03772251.mRNA mRNA upstream 101510 3749842 ~ 3772506 (-) True CI01000043_03750004_03772251
CI01000043_03782397_03783190.mRNA mRNA upstream 132980 3781312 ~ 3784125 (-) True CI01000043_03782397_03783190
CI01000043_03912564_03929022.mRNA mRNA upstream 263594 3911926 ~ 3929022 (-) True CI01000043_03912564_03929022
CI01000043_04168896_04172758.mRNA mRNA upstream 520539 4168871 ~ 4172758 (-) True CI01000043_04168896_04172758
CI01000043_04185319_04204509.mRNA mRNA upstream 536776 4185108 ~ 4205041 (-) True CI01000043_04185319_04204509
TU217252 other downstream 598185 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 1398569 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 2764881 825737 ~ 883168 (-) False G189881
TU215686 other downstream 2764881 871379 ~ 883168 (-) True G189881
TU215693 other downstream 2773784 814747 ~ 874265 (-) False G189881
TU218131 other upstream 683579 4331911 ~ 4332726 (-) True G192109
TU219083 other upstream 1808165 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 1945349 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 2607240 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 2915008 6563340 ~ 6566039 (-) True G193922

Expression Profile