RNA id: TU217960


Basic Information

Item Value
RNA id TU217960
length 320
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G191941
representative True

Chromosome Information

Item Value
chromosome id CI01000043
NCBI id null
chromosome length 7746009
location 3966947 ~ 3969342 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGGATCAGGGTAGGCAGCAAACAATCACAGTCCAGGAAACAGGCAAAGATCAGGGCAGGCAGCAAGGGTCACAGAGAATAAACAATCCAAACGGAAACCAGGAAACAGTCCACAAGAAAACGCTTAGTAATGATCACCACGGCAAATCAAGACTTCACAAAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTAAATAGTCCAGGTAATGATCTGCAGGTGTGTGTGGCAATTGGTGATTGGTGCATGTGATTGGAAGGGAGGATTATGGGAAGTGGAGTCCAGGAACTGACAGGAACAGACAGTGATCGTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217954 lncRNA downstream 7988 3958727 ~ 3958959 (-) True G191938
TU217953 lncRNA downstream 8384 3958336 ~ 3958563 (-) True G191937
TU217948 lncRNA downstream 22949 3943779 ~ 3943998 (-) True G191932
TU217945 lncRNA downstream 39468 3927266 ~ 3927479 (-) True G191929
TU217893 lncRNA downstream 113789 3852844 ~ 3853158 (-) True G191891
TU218140 lncRNA upstream 383542 4352884 ~ 4353110 (-) True G192118
TU218148 lncRNA upstream 412190 4381532 ~ 4381735 (-) True G192126
TU218160 lncRNA upstream 430604 4399946 ~ 4400234 (-) True G192138
TU218185 lncRNA upstream 456124 4425466 ~ 4425793 (-) True G192163
TU218276 lncRNA upstream 570352 4539694 ~ 4540445 (-) True G192243
CI01000043_03912564_03929022.mRNA mRNA downstream 37925 3911926 ~ 3929022 (-) True CI01000043_03912564_03929022
CI01000043_03782397_03783190.mRNA mRNA downstream 182822 3781312 ~ 3784125 (-) True CI01000043_03782397_03783190
CI01000043_03750004_03772251.mRNA mRNA downstream 194441 3749842 ~ 3772506 (-) True CI01000043_03750004_03772251
CI01000043_03636807_03672561.mRNA mRNA downstream 294267 3636471 ~ 3672680 (-) True CI01000043_03636807_03672561
CI01000043_03548130_03586519.mRNA mRNA downstream 380011 3547810 ~ 3586936 (-) True CI01000043_03548130_03586519
CI01000043_04168896_04172758.mRNA mRNA upstream 199529 4168871 ~ 4172758 (-) True CI01000043_04168896_04172758
CI01000043_04185319_04204509.mRNA mRNA upstream 215766 4185108 ~ 4205041 (-) True CI01000043_04185319_04204509
CI01000043_04292518_04294909.mRNA mRNA upstream 322841 4292183 ~ 4294909 (-) True CI01000043_04292518_04294909
CI01000043_04297368_04337304.mRNA mRNA upstream 327482 4296824 ~ 4337304 (-) True CI01000043_04297368_04337304
CI01000043_04486893_04491014.mRNA mRNA upstream 517259 4486601 ~ 4491988 (-) True CI01000043_04486893_04491014
TU217252 other downstream 917083 3048372 ~ 3049864 (-) True G191296
TU216373 other downstream 1717467 2244688 ~ 2249480 (-) True CI01000043_02245322_02249390
TU215688 other downstream 3083779 825737 ~ 883168 (-) False G189881
TU215686 other downstream 3083779 871379 ~ 883168 (-) True G189881
TU215693 other downstream 3092682 814747 ~ 874265 (-) False G189881
TU218131 other upstream 362569 4331911 ~ 4332726 (-) True G192109
TU219083 other upstream 1487155 5456497 ~ 5458414 (-) True G192980
TU219049 other upstream 1624339 5593681 ~ 5618440 (-) True G192947
TU219459 other upstream 2286230 6255572 ~ 6256279 (-) True G193313
TU220206 other upstream 2593998 6563340 ~ 6566039 (-) True G193922

Expression Profile